Beijerinckiaceae bacterium RH AL1: RHAL1_02138
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Entry
RHAL1_02138 CDS
T06029
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Pathway
bbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHAL1_02138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbar03019
]
RHAL1_02138
Messenger RNA biogenesis [BR:
bbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RHAL1_02138
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
VVC55223
LinkDB
All DBs
Position
1:2159467..2161170
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AA seq
567 aa
AA seq
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MTNSDLRTLSAIPRPGEDAILVATIGGVAEIGMNWTLYGADDQFILVDAGTTFAPRDVAG
VEAVMPDPHIFRLLGRRLKGLVVTHFHEDHVGAIHRLWPKHAKCPIFAPPFAAMMLSNRF
QEMGTRGNVSLTTFTPGAELDIGAFHLRTIMVAHSTPHCVALAIEHGGKRIIHTGDWKID
PAPGIGSTTDLDAFARLGRAGVDLMLCDSTNADRERPQTSEASVREAMTKVFKDAKGMVF
VSSFGSNVARMASVAHAAKAARRKVALAGRSLRNAAEVAEKLGLTRDVPAFLPDSTKFNG
TQRRGCVLICTGTQGEENAALAKLAAKKVVDPRLPEVKPGDVIVHSARAIPGNEEYIDAV
LDGLRAKGARIITAADLVDGQPVHVTGHPCRTDLREMYKAVRPRLAMPVHGTPAHLEAHA
ALARDAGVEAAVTPRDGAIYALTHGGLAEVGHLALGRVAVLNDGAATLVPWSDAEQRPLL
SAADADRIERHMQVEDDRLQRKLDRLAGPAHPARDRAKARQRTGRGERSADAYHVAEVTR
PFTVETRKRRSAAPARPQSFIEGPQPF
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgactaacagcgatctgcggacgctctccgcgatcccgcgtcccggcgaggacgcgatc
ctcgtcgccaccatcggcggcgtcgccgaaatcggaatgaactggaccctctacggcgcc
gacgaccaattcatcctggtcgatgccggcacgaccttcgcgccgcgcgacgtcgccggc
gtcgaggcggtgatgcccgaccctcacatcttccggcttctcggccggcgcctcaaaggt
ctcgtcgtcacgcacttccatgaagaccacgtcggcgcgatccaccgcctttggccgaag
catgcgaaatgcccgatcttcgcgccgcccttcgcggcgatgatgctgtcgaaccggttc
caggagatgggcacgcggggcaacgtcagcctcacgacctttacgcccggtgccgagctc
gatatcggcgccttccatctgcgcacgatcatggtcgcgcattcgacgccgcattgcgtc
gccctcgccatcgagcacggcggcaagcgcatcatccacaccggtgactggaagatcgat
ccggctccggggatcggctcgaccacggacctcgatgccttcgctaggctcgggcgcgcc
ggcgtcgacctgatgctctgcgactcgacgaacgccgatcgcgagcggccgcagacgtcg
gaagcctccgtgcgcgaggctatgacgaaggtcttcaaggacgcgaaaggcatggtcttc
gtctcgagcttcggctcgaacgtcgcccggatggcctcggtggcgcatgcggcgaaggcc
gcgcggcgcaaggtggcgctggccggccgctcgttgcgcaacgccgctgaggtggccgag
aagctcggcctgacccgcgacgtgccggcattcctgcccgactcgacgaagttcaacggc
acgcaacggcgcggctgcgtgctgatctgcacggggacgcagggcgaggagaatgcggcg
ctcgccaagctcgccgcgaagaaggtcgtcgatccacgcttgcccgaggtgaagccgggc
gacgtcatcgtccactcggcgcgggcgatccccggcaacgaggagtacatcgacgccgtg
ctcgacggcctgcgcgccaagggcgccaggatcatcaccgccgccgatctcgtcgacggg
cagccggtccacgtcacggggcatccctgccggacggacttgcgcgaaatgtataaggcc
gtgcggccgcgcctcgcgatgcccgtgcacggcacgccggcgcacctcgaggcgcatgcg
gcgcttgcgcgcgatgccggcgtcgaggccgcggtgacgccgcgcgacggcgcgatctac
gcgctcacgcacggcggtctcgcggaagtcggccatttggccttgggccgcgtggcggtc
ctcaacgacggcgcggcgacgctggtgccatggtcggacgccgagcagcggcccctgctc
tcggcggcggacgccgatcgcatcgagcggcacatgcaggtcgaggacgatcggctgcag
cggaagctggaccggctcgccggacccgcgcacccggcgcgcgaccgcgccaaggctcgg
cagcgcacgggccgcggcgaacgctccgccgacgcctaccacgttgcggaggtcacgcgg
ccgttcacggtggagacgcggaagcgcagatcggccgctccggcgcggccgcaatccttc
atcgaaggaccgcagccgttctga
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