KEGG   Beijerinckiaceae bacterium RH AL1: RHAL1_02138
Entry
RHAL1_02138       CDS       T06029                                 
Name
(GenBank) hypothetical protein
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
bbar  Beijerinckiaceae bacterium RH AL1
Pathway
bbar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bbar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RHAL1_02138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bbar03019]
    RHAL1_02138
Messenger RNA biogenesis [BR:bbar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RHAL1_02138
SSDB
Motif
Pfam: RNase_J_b_CASP Lactamase_B Lactamase_B_2 RMMBL Anti-Pycsar_Apyc1
Other DBs
NCBI-ProteinID: VVC55223
LinkDB
Position
1:2159467..2161170
AA seq 567 aa
MTNSDLRTLSAIPRPGEDAILVATIGGVAEIGMNWTLYGADDQFILVDAGTTFAPRDVAG
VEAVMPDPHIFRLLGRRLKGLVVTHFHEDHVGAIHRLWPKHAKCPIFAPPFAAMMLSNRF
QEMGTRGNVSLTTFTPGAELDIGAFHLRTIMVAHSTPHCVALAIEHGGKRIIHTGDWKID
PAPGIGSTTDLDAFARLGRAGVDLMLCDSTNADRERPQTSEASVREAMTKVFKDAKGMVF
VSSFGSNVARMASVAHAAKAARRKVALAGRSLRNAAEVAEKLGLTRDVPAFLPDSTKFNG
TQRRGCVLICTGTQGEENAALAKLAAKKVVDPRLPEVKPGDVIVHSARAIPGNEEYIDAV
LDGLRAKGARIITAADLVDGQPVHVTGHPCRTDLREMYKAVRPRLAMPVHGTPAHLEAHA
ALARDAGVEAAVTPRDGAIYALTHGGLAEVGHLALGRVAVLNDGAATLVPWSDAEQRPLL
SAADADRIERHMQVEDDRLQRKLDRLAGPAHPARDRAKARQRTGRGERSADAYHVAEVTR
PFTVETRKRRSAAPARPQSFIEGPQPF
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgactaacagcgatctgcggacgctctccgcgatcccgcgtcccggcgaggacgcgatc
ctcgtcgccaccatcggcggcgtcgccgaaatcggaatgaactggaccctctacggcgcc
gacgaccaattcatcctggtcgatgccggcacgaccttcgcgccgcgcgacgtcgccggc
gtcgaggcggtgatgcccgaccctcacatcttccggcttctcggccggcgcctcaaaggt
ctcgtcgtcacgcacttccatgaagaccacgtcggcgcgatccaccgcctttggccgaag
catgcgaaatgcccgatcttcgcgccgcccttcgcggcgatgatgctgtcgaaccggttc
caggagatgggcacgcggggcaacgtcagcctcacgacctttacgcccggtgccgagctc
gatatcggcgccttccatctgcgcacgatcatggtcgcgcattcgacgccgcattgcgtc
gccctcgccatcgagcacggcggcaagcgcatcatccacaccggtgactggaagatcgat
ccggctccggggatcggctcgaccacggacctcgatgccttcgctaggctcgggcgcgcc
ggcgtcgacctgatgctctgcgactcgacgaacgccgatcgcgagcggccgcagacgtcg
gaagcctccgtgcgcgaggctatgacgaaggtcttcaaggacgcgaaaggcatggtcttc
gtctcgagcttcggctcgaacgtcgcccggatggcctcggtggcgcatgcggcgaaggcc
gcgcggcgcaaggtggcgctggccggccgctcgttgcgcaacgccgctgaggtggccgag
aagctcggcctgacccgcgacgtgccggcattcctgcccgactcgacgaagttcaacggc
acgcaacggcgcggctgcgtgctgatctgcacggggacgcagggcgaggagaatgcggcg
ctcgccaagctcgccgcgaagaaggtcgtcgatccacgcttgcccgaggtgaagccgggc
gacgtcatcgtccactcggcgcgggcgatccccggcaacgaggagtacatcgacgccgtg
ctcgacggcctgcgcgccaagggcgccaggatcatcaccgccgccgatctcgtcgacggg
cagccggtccacgtcacggggcatccctgccggacggacttgcgcgaaatgtataaggcc
gtgcggccgcgcctcgcgatgcccgtgcacggcacgccggcgcacctcgaggcgcatgcg
gcgcttgcgcgcgatgccggcgtcgaggccgcggtgacgccgcgcgacggcgcgatctac
gcgctcacgcacggcggtctcgcggaagtcggccatttggccttgggccgcgtggcggtc
ctcaacgacggcgcggcgacgctggtgccatggtcggacgccgagcagcggcccctgctc
tcggcggcggacgccgatcgcatcgagcggcacatgcaggtcgaggacgatcggctgcag
cggaagctggaccggctcgccggacccgcgcacccggcgcgcgaccgcgccaaggctcgg
cagcgcacgggccgcggcgaacgctccgccgacgcctaccacgttgcggaggtcacgcgg
ccgttcacggtggagacgcggaagcgcagatcggccgctccggcgcggccgcaatccttc
atcgaaggaccgcagccgttctga

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