Beijerinckiaceae bacterium RH AL1: RHAL1_02230
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Entry
RHAL1_02230 CDS
T06029
Symbol
topA_1
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbar03032
]
RHAL1_02230 (topA_1)
03400 DNA repair and recombination proteins [BR:
bbar03400
]
RHAL1_02230 (topA_1)
Enzymes [BR:
bbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RHAL1_02230 (topA_1)
DNA replication proteins [BR:
bbar03032
]
Prokaryotic type
DNA Topoisomerases
RHAL1_02230 (topA_1)
DNA repair and recombination proteins [BR:
bbar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RHAL1_02230 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
Toprim_C_rpt
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
VVC55313
UniProt:
A0A5E4NYW6
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All DBs
Position
1:2255617..2257713
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AA seq
698 aa
AA seq
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MDVVIVESPAKAKTINKYLGKNFEVYASYGHIRDLPSKDGSVDPTDDFAMIWDVDSKSAQ
RMNVIAKAVKGADRVILATDPDREGEAISWHVLEVLKSKKVLKDVKVDRVTFNAITKSAV
SEAMARPREIDAALVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVTLRIICDR
ELEIEKFVRQEYWSLTAFLKTQDRQSFLARLVGADGEKLGRLDIKTEADAKALQAALDAG
SYTVTKVEAKPARRNPYPPFTTSTMQQEASRKLGFTPNRTMQLAQRLYEGVEIGGETIGL
ITYMRTDGVDMAPEAVHGARRVINQQYGDRYVPKQPRQYTTKAKNAQEAHEAIRPTEMAR
LPKEVARAMEPDMAKLYELIWVRTVASQMESADLERTTVDILADANGRKLELRANGQVVK
FDGFLRVYQEGRDDEEDEESSRLPAMSDGDRLIKEKVEATQHSTEPPPRYTEATIIKKME
ELGIGRPSTYDATIQTLKAREYVRVDKKRLIPEDKGRLVTAFLESFFARYIGYDFTAELE
EKLDRISNHEIDWRQVLRDFWQDFSEAVAGTADLRVAEVLDNLNEVLGAHIFPPREDGGD
PRQCQACGNGQLSLKLGKFGAFIGCSNYPECKYTRQLGQADGVEAEGGGPKVLGLDPQSG
LEVTVRDGRFGPYIQLGEPDEGEKPSARPCRKVWRRTT
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcgtcatcgtcgagtcgcccgccaaggccaagacgatcaacaaatacctcgga
aagaatttcgaggtctacgcctcctacgggcacatccgcgacctgccgtccaaggacggg
tcggtcgatcccaccgatgatttcgcgatgatctgggacgtcgactcgaagtcggcgcag
cggatgaacgtcatcgccaaggccgtgaagggcgccgaccgcgtcatcctggcgaccgac
cccgaccgcgagggcgaggcgatctcctggcacgtgctggaggttctgaagagcaagaag
gtgctcaaggacgtcaaggtcgaccgcgtcactttcaatgcgatcaccaagagcgccgtg
tctgaagcaatggcacgcccgcgcgagatcgacgcggcgctcgtcgacgcctacctggcg
cgccgcgcgctcgactatctcgtcggcttcacgctctcgcccgtgctgtggcgcaagctc
ccgggtgcccgctccgccggccgcgtgcagtcggtgaccttgcggatcatctgcgaccgc
gagctcgagatcgaaaagttcgtccggcaggagtactggtcgctcaccgcgttcctgaag
acgcaggaccggcagagcttcctcgcccgcctcgtcggcgccgacggcgagaagctcggc
cggctcgacatcaagaccgaggcggacgccaaggcgcttcaggccgcgctcgacgccggc
tcctacaccgtcaccaaggtcgaggcgaagccggcgcggcgcaacccgtatccgccgttc
accacctcgaccatgcagcaggaggcctcgcgcaagctcggcttcacgccgaaccgcacg
atgcagctcgcccagcgtctctacgagggcgtcgagatcggcggcgagacgatcggcctc
atcacctacatgcgaaccgacggcgtcgacatggcgccggaggccgtgcacggcgcgcgc
cgggtgatcaaccagcagtacggcgaccgctacgtgccgaagcagccgcgccagtacacg
accaaggccaaaaacgcccaggaggcgcacgaggcgatccgcccgaccgagatggcccgc
ctgccgaaggaggtggcgcgcgccatggagccggacatggcgaagctctacgagctgatt
tgggtccgcaccgtcgcgagccagatggaatcggccgacctcgagcgcacgaccgtcgac
atcctcgccgacgccaacggccgcaagctcgagctgcgcgccaacggtcaggtcgtgaag
ttcgacggcttcctcagggtctatcaggaaggtcgcgacgacgaggaggacgaggaaagc
tcgcgtcttcccgccatgtccgacggcgacaggctcatcaaggagaaggtcgaggcgacc
cagcactcgaccgagccgccgccgcgctacaccgaggcgacgatcatcaagaagatggag
gagctcggcatcgggcgcccttccacctacgatgcgacgatccagaccctgaaggcgcgc
gagtacgtgcgcgtcgacaagaagcggctcattccggaggacaaggggcgcctcgtcacg
gcgttcctcgagagcttctttgcccgctacatcggctacgacttcaccgccgagctggag
gagaagctcgatcgcatctcgaaccacgagatcgactggcggcaggtgctgcgcgacttc
tggcaggatttttccgaggccgtcgccggcaccgcggacctccgtgtcgccgaggtgctc
gacaacctcaacgaggtgctcggcgcgcacatcttcccgccgcgcgaggacggcggcgac
ccgcggcagtgccaggcctgcggcaacggccagctctcgctgaagctcggcaagttcggc
gccttcatcggctgctcgaactatcccgagtgcaagtacacgcgccagctcggccaggcc
gacggcgtcgaggcggagggcggcggcccgaaggtgctcggcctcgacccgcagtccggg
ctcgaggtgacggtgcgcgacggccgcttcggcccctacatccagctcggcgagcccgac
gagggcgagaagccaagcgctcgtccttgccgaaaggtttggcgccgaacgacctga
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