Beijerinckiaceae bacterium RH AL1: RHAL1_03545
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Entry
RHAL1_03545 CDS
T06029
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bbar
Beijerinckiaceae bacterium RH AL1
Pathway
bbar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHAL1_03545 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbar03019
]
RHAL1_03545 (srmB)
03400 DNA repair and recombination proteins [BR:
bbar03400
]
RHAL1_03545 (srmB)
Enzymes [BR:
bbar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHAL1_03545 (srmB)
Messenger RNA biogenesis [BR:
bbar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RHAL1_03545 (srmB)
DNA repair and recombination proteins [BR:
bbar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RHAL1_03545 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
Helicase_C
RecQ_Zn_bind
AAA_30
Motif
Other DBs
NCBI-ProteinID:
VVC56616
UniProt:
A0A5E4P391
LinkDB
All DBs
Position
1:complement(3556905..3558827)
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AA seq
640 aa
AA seq
DB search
MEAVPAHALDALHRVFGFAELKPGQADVVAAVLAGEDVLAVMPTGAGKSLCYQLPAVVGQ
KLTVVVSPLIALMRDQVGALQGRGVAAGALHSGNTGAEAADVEAALRRRALRLVYVSPER
LLRPGTIGLLREAGCDRLAIDEAHCVSQWGHDFRPEYMELRAAADALGDPAILAVTASAD
HATREEIVAKLFRRAPRRFVRSFDRPNLHLSIARKSDALAQIRTFLKAHKGQAGIVYAAS
RKGVEKLAERLAKDGIWALPYHAGMEPALRHAHQDEFLRHEGVVVVATIAFGMGIDKPDV
RFVCHADLPGSVEGYYQEIGRAGRDGQRSNTLMLWGEGDVRLRERQIALSDAGPAHKAVE
RRRLSALLALCETPRCRRQTLLAAFGEEGPPCGFCDMCDGAHAMFDGKVAAQKAMSAVLR
TAGRFYPGHLANLLIGKATEAISRHGHDDLPTFGVGGEFTAAEWRSVFRQIQAAGLIAQD
AEDGGRWLVTEAGRARAEERRAARARRRRARDPQGPRGARRPARRRRGRCAVPARRGAGR
RRRGPPHHRRPAPLRPAEGVADRGRPGAEGAALRRLQRPHAARHRRRPAARRLRPVAHPR
RRAGQDRELRGQGARGRGRLRRRLGLPASRGRVAATSAWR
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgcccgcgcatgcgctcgatgcgctgcaccgcgtcttcggcttcgccgag
ctgaagcccggccaggccgacgtggtggcggcggtgctcgccggcgaggacgtgctcgcc
gtcatgccgacgggggcgggcaagtcgctctgctaccagctccccgccgtcgtcgggcag
aagctcaccgtcgtcgtctcgccgctcatcgccctgatgcgcgaccaggtcggcgcgctg
cagggccggggcgtcgcggcgggcgccctgcactcgggcaacaccggcgccgaggcggcc
gatgtcgaggccgcgctacgccggcgcgcgctgcggctcgtctacgtctcgccggagcga
ctgctgcggcccggcaccatcgggctcctgcgcgaggcgggatgcgaccggctggcgatc
gacgaggcgcactgcgtctcgcagtggggccacgatttccgtcccgagtacatggagctg
cgcgccgccgcggacgcgctgggcgatcccgcgatcctcgcggtcaccgcctcggccgac
cacgcgacgcgggaagagatcgtcgcaaagctgttccggcgggcgccgcggcgcttcgtg
cgctcgttcgaccggccgaacctgcatctttccatcgcccgcaagagcgacgcgctcgcg
cagatccgcaccttcctcaaggcgcacaaggggcaggcgggcatcgtctacgcggcctcg
cgcaagggcgtggaaaagctcgccgagcggctggccaaggacggcatctgggcgctgccc
taccacgccggcatggagcctgccctccgccacgcccaccaggacgagttcctgcgccac
gagggcgtggtggtcgtcgcgacgatcgctttcggcatgggcatcgacaagcccgacgtg
cgcttcgtctgccacgccgacctgccgggctcggtcgagggctactaccaggagatcggc
cgcgccggccgcgacgggcagcgctcgaacacgctgatgctgtggggcgagggcgacgtg
cgcctgcgcgagcgccagatcgccctctccgacgccggccccgcccataaggcggtcgag
cgccgccggctctcggccctgctggcgctctgcgagacgccgcgctgccgccgccagacc
ctgctcgccgccttcggcgaggaagggccgccctgcggcttctgcgacatgtgcgacggc
gcccacgcgatgttcgacggcaaggtcgcggcacagaaggcgatgtcggcggtgctgcgc
acggccggccgcttctaccccggccacctcgccaacctgttgatcggcaaggcgaccgag
gcgatctcgcgccacggccacgacgacctgccgaccttcggcgtcggcggcgagttcacc
gccgccgagtggcgcagcgtgttccggcagatccaggccgccggcctcatcgcccaggat
gctgaggacggcggccgctggctcgtcaccgaggccgggcgcgcgcgtgctgaagagcga
cgcgccgctcgagctcgtcgccgccgagcccgagacccgcaagggccgcgcggcgcgcgc
cgccctgcgcggcgtcgccgaggccgatgcgccgtccccgcgcggcgcggcgccggccga
cgccgacgaggcccacctcaccaccgacgacctgcgcctcttcgcccggctgaaggcgtg
gcggaccgaggtcgcccgggcgcagaaggtgccgccctacgtcgtcttcaacgaccgcac
gctgcgcgccatcgccgccgcccggccgcgcgacgccttcgacctgtcgcgcatccacgg
cgtcgggccggccaagatcgcgagctacggggacaaggtgctcgaggtcgtggccggctt
cgccgacggctaggcctccccgcatcacgggggagggtcgccgctacttctgcttggcga
tga
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