Bdellovibrio bacteriovorus Tiberius: Bdt_0226
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Entry
Bdt_0226 CDS
T02356
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Pathway
bbat02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Bdt_0226 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbat03021
]
Bdt_0226 (rpoD)
Transcription machinery [BR:
bbat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Bdt_0226 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Syntaxin_2
FAM176
Sigma70_ner
Motif
Other DBs
NCBI-ProteinID:
AFX99935
UniProt:
K7YJV2
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All DBs
Position
231752..233581
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AA seq
609 aa
AA seq
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MKPNLPNKQEKEPVKVLSLQEQETLIKEEIQRFLKLAKEKGALTIEEINELLPPEILAPS
VLDSFMQGLEAGGVVISDLSESSKEEEGEGSFLENVDSEDEEIDDEEKAESEDVKGNDPV
RLYLRKMGSVSLLTREGEVEIARRIEKGEREIVRAILLSPLGTYEIIQLGKRLDEGRIKV
KSIFRGLEDEDTQYDEKEYIDKIHELIGRVTEYQKAAEKLFLTLRKEETNTPARQAAMKE
LVVMNDKLMANFESVNFNRKTINRVVIKFKNLVNRIGTLRRRIKDGVERTFSKDVAAMAE
RMKLIDANEKELTRMTRDTGLNYQKFKSYVLQAQEAEKRISRLDSETEMNHNWVKETYTA
IWKGEREADAAKSELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLVRTSRYLIQELGREPTPEEIA
DKMDMPVDKVRKVLKIAKEPISLETPVGEEEDSHLGDFIEDKKVINPAEAIVNLNLAEQT
RRVLSTLTPREEKVLRMRFGIGEESDHTLEEVGQDFNVTRERIRQIEAKALRKLRHPSRS
NKLKAFVDS
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgaacctaccaaacaaacaagagaaagagcctgtgaaggttctttctttgcag
gaacaggaaactctgattaaagaagaaatccagagattcctgaagcttgcaaaggagaag
ggtgcgctgaccattgaggaaatcaatgagctccttccccctgaaattctagctccatct
gtgctggactcgttcatgcagggccttgaggccggtggtgtagtaatttcagacttgtct
gaaagttcgaaagaggaagagggcgaaggctccttcctggaaaacgtcgattctgaagac
gaagaaattgatgatgaagaaaaagccgaaagtgaagacgttaagggcaatgacccggta
cgcctttacctgcgcaaaatgggaagcgtttcccttctgacccgtgaaggggaagtggaa
attgcccgtcgtattgaaaaaggggagcgcgagatcgttcgtgcgatccttttgtcccct
ctgggtacctacgagatcatccagcttggtaagcgccttgatgaaggccgtatcaaagtt
aaatcgatcttccgtggtcttgaggacgaggacactcagtacgatgaaaaggaatacatc
gataagatccatgagcttatcggtcgtgtgactgaataccagaaagcggcggaaaagctg
ttcctgactcttcgtaaagaagagacgaacactccggctcgtcaggctgccatgaaagag
cttgttgtcatgaatgacaagttgatggcgaacttcgagtccgtgaatttcaaccgtaaa
actatcaaccgcgttgtgatcaagttcaaaaacctggtgaaccgtatcggaactcttcgt
cgtcgtatcaaagacggtgttgaacgcacgttctccaaagacgttgcagcgatggctgaa
cgtatgaaactgatcgatgcgaatgaaaaagaactgacccgtatgacccgcgatactggt
ttgaactatcagaagttcaaatcctacgtattgcaggctcaggaagcggaaaagcgtatc
agccgtttggattcagaaactgaaatgaatcacaactgggtgaaagaaacctacacggcc
atctggaaaggtgagcgtgaagctgatgccgcgaaatccgagttggttgaagccaatctt
cgtctggttgtatccatcgcgaagaagtacaccaaccgcggtctgcaattcctggatctg
atccaggaaggtaacatcggtttgatgaaagccgtggataagttcgaataccgtcgtggt
tacaaattctcgacttatgcgacttggtggatccgtcaggcgatcactcgtgctattgcc
gatcaggcgcgcacgatccgtatccctgtgcacatgatcgaaaccatcaacaaacttgtt
cgtacatcccgttacctgatccaggaacttggccgtgagccgaccccggaagaaatcgcg
gataaaatggacatgccagttgataaggttcgcaaggttctgaaaattgcgaaagaacct
atctctctggaaactccagtgggtgaagaggaagattcacacctgggcgactttatcgag
gacaaaaaggttatcaatcctgcagaagcgattgtgaatctgaaccttgctgaacaaacc
cgccgtgtgctgtcgactttgactccaagagaagaaaaagtcctgcgcatgcgtttcggt
atcggggaagaatccgaccatactttggaagaagtgggtcaggacttcaacgtaacccgt
gagcgtatccgtcagatcgaggcgaaagctctaagaaagcttcgtcatccttctcgcagc
aacaaactaaaagcgtttgttgattcctag
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