Bdellovibrio bacteriovorus Tiberius: Bdt_0912
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Entry
Bdt_0912 CDS
T02356
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbat03032
]
Bdt_0912 (topA)
03400 DNA repair and recombination proteins [BR:
bbat03400
]
Bdt_0912 (topA)
Enzymes [BR:
bbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Bdt_0912 (topA)
DNA replication proteins [BR:
bbat03032
]
Prokaryotic type
DNA Topoisomerases
Bdt_0912 (topA)
DNA repair and recombination proteins [BR:
bbat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Bdt_0912 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AFY00612
UniProt:
K7ZEL7
LinkDB
All DBs
Position
919406..922135
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AA seq
909 aa
AA seq
DB search
MAKKSDATDGIKLVIVESPTKAKTIRKFLGRDYVVESCMGHIRDLPQSAKDIPEKVKKEK
WAQLGVNVDKNFEPLYCVPKDKTKVVKNLKDKLEEASELYLATDEDREGESISWHLLEVL
KPKVPTKRMVFHEITKDAIQKALKDTREIDFNLVRAQEARRVLDRLVGYTISPLLWKKVA
YGLSAGRVQSVAVRLIVERELERVRFKKSSYWGVLAELSKDGVAFESRLQQYKNQRVATG
KDFDGLTGQLTAGKDVLVLDETTAGKLSMDLKSGNWQVTDVEEKPTFRKPAPPFITSTLQ
QESNRKLGLSSRETMQVAQKLYEQGFITYMRTDSTFLSNEAITASRDCIESKYGKDYLTP
QPRNYAAKKVKGAQEAHEAIRPAGNQFMDPDETGLTGTQFRLYDLIWKRTIASQMVDARQ
KQVSAKITVGDALFGASGMTIEFPGFLRAYVEGSDDPEADLAEREVRLPALKVKDGVKCA
KLDPTSHETKPPARYTEASLVQTMEKEGIGRPSTYASVIGTIIDRGYVRKNGTALVPTFT
AMIVSKLLSQHLSQYVDLGFTSEMEQSLDNIADGELDWESYLASVYKGPKGLRAMVDNQG
DKIDPNEARTMTLEGMDKYKFHVGRYGAYVTTQRDGEDVSASLPDNESPADITPEIAEKL
IDQKINGADSLGNDPETDLPVYVLNGRYGPYVQLGDVTPEDDKPKRASLPPGTQPEQVDL
AMALSLLQLPKTLGTHPGTGKDIKAGLGRFGPFVVHDGDYRSIPKGESIFNITFEKAMEM
LAQPKKGRGRAAPLKELGAHPDSGDAIQVFNGPYGPYIKCGKVNASLPEGATPDTVTLEQ
AVALINEKGPAKGKGKAKGKAKAAPKAKAAKADGEKPAAKKPALKKAANAKEKAEALGVK
KVVTRKSKK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaaaagtgacgcaacagatggtatcaagcttgtcatcgtggagtctcccacg
aaggcaaagaccattcgcaagttcctgggaagagattatgtggtggagtcctgcatgggc
cacatccgtgaccttcctcagtccgcaaaagacatcccggaaaaggtgaaaaaagaaaag
tgggcgcaactcggcgtgaacgtcgataaaaacttcgagcccctttactgcgttcccaag
gataaaaccaaggtcgtcaaaaacctgaaagacaaacttgaagaagcctcagagctgtac
ctcgcgacggatgaagaccgcgaaggggaatctatcagctggcacttgctggaagttttg
aagccgaaagttccaaccaagcgcatggtattccatgagatcaccaaagacgcgattcaa
aaagctttgaaagacacccgtgaaatcgacttcaacctggtgcgtgcccaagaagcccgc
cgtgttctggatcgtttggtgggttacacgatttctccgctgctttggaaaaaagtagct
tacggtctttctgcgggccgtgttcagtccgtggcggttcgcctgatcgtggaaagagaa
cttgagcgcgtgcgctttaaaaagtcctcttactggggcgtgcttgcggagctgagcaaa
gacggtgtggcttttgaatcccgtctgcaacaatacaaaaatcaacgggtagcaaccggt
aaggactttgatggtctgacgggtcagctgacggcaggtaaagacgttctggttctggat
gaaacgaccgcgggcaaactgtccatggatttgaaatccggcaactggcaggtgacggat
gtcgaggaaaaaccgaccttccgtaagccagcgcctccgtttatcacgtccactttacag
caggaatccaatagaaaattgggtctcagctcgcgtgaaaccatgcaagtggcgcagaag
ctgtacgaacaaggtttcatcacctatatgcgtacggattccacattcctttccaatgaa
gctatcactgcttcccgtgattgcatcgaaagcaagtacggaaaagactatctgacacct
cagccgcgcaattacgctgctaagaaagtcaaaggcgctcaagaggcccacgaagcgatc
cgtcctgccgggaaccagtttatggatccggatgaaacgggtctgacggggactcagttc
cgtctttatgatctgatctggaaacgtacgattgcgtcccagatggtggatgcccgtcag
aaacaagtcagcgcaaaaatcaccgtgggtgatgcgttgtttggtgcttccggcatgacc
attgaattcccgggcttcttgcgagcttacgtggaaggcagtgatgatccagaagcggat
ctggctgaacgtgaagtgcgtctgccggctttgaaagtcaaagacggtgtgaagtgcgcg
aaactggatccaacgtcccacgaaaccaaaccaccagctcgttatacagaggcaagcctt
gttcaaacgatggaaaaagagggcatcggccgtccttccacgtacgcttctgttatcgga
accatcattgaccgtggctacgttcgtaagaacggaacggcgttggtgccgaccttcacg
gcgatgattgtttcaaaacttctaagtcagcatttgtcccagtatgtggatttgggcttc
acttccgaaatggaacaaagcctggataatatcgctgacggggaactggattgggaaagc
taccttgcgtccgtgtacaaaggccctaagggcttgcgtgcgatggtcgacaatcaaggt
gacaagattgatccaaacgaagcccgtacaatgaccttggaaggcatggacaaatacaaa
ttccatgtcggccgttacggtgcttatgtgaccactcagcgtgatggtgaagatgtcagt
gcctctttgcctgacaatgaatctccggcggatatcactccggaaatcgctgaaaaactg
attgatcagaaaatcaacggtgctgattctttgggtaatgacccggaaacagatctgccg
gtttatgttctgaacggccgttatggtccgtatgttcaattgggtgatgtgactccggaa
gacgacaagccgaaacgtgcgtcgcttcctccgggcacgcagcctgaacaggtggatctg
gcgatggcgctcagcctgctgcaattgccaaagaccttggggactcacccgggcacgggc
aaagacatcaaagcgggcttgggtcgttttggtccgttcgtggttcacgacggcgactat
cgttcgattccaaaaggtgaaagcatctttaatatcacctttgaaaaagccatggagatg
ctggctcaaccgaaaaaaggacgtggtcgtgcggctccgttgaaagagctgggcgcgcat
ccggattcaggcgatgcgattcaggtcttcaatggtccttacggtccgtacatcaagtgc
ggcaaggtcaatgcttctttgccagagggtgcgacgccagacacggtgaccctggagcaa
gctgttgctttgatcaatgaaaagggcccggcaaaaggcaaaggtaaagctaaaggaaag
gcgaaagccgctccgaaagccaaagccgctaaagctgatggcgaaaagcctgctgcaaaa
aagcccgctttgaagaaagccgctaacgccaaagaaaaagccgaagctttgggtgtcaaa
aaagtagtcactcgcaagtccaagaagtaa
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