Bdellovibrio bacteriovorus Tiberius: Bdt_1160
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Entry
Bdt_1160 CDS
T02356
Symbol
ycbB
Name
(GenBank) putative periplasmic protein YcbB
KO
K21470
L,D-transpeptidase YcbB
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bbat01002
]
Bdt_1160 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bbat01011
]
Bdt_1160 (ycbB)
Peptidases and inhibitors [BR:
bbat01002
]
Cysteine peptidases
Family C82
Bdt_1160 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
bbat01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Bdt_1160 (ycbB)
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Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
AFY00860
UniProt:
K7YVZ1
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All DBs
Position
1222214..1223965
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AA seq
583 aa
AA seq
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MSMKSLVKKTFLIGMSMMTLAPQFATAALESQINYYLNREDTKDIPFMFVRGSNFYLHKN
TLSALYEKRGFSAIWVDAKGRPNAMAAAVKDALKQGAILNGLNPDDYWDKMIESIYVSNT
DGKFGPTFELAVSEAVIRYVTHLSTGRFDPMEIDTDIKLPKKKFTEYAELSQVISSVEGR
PDVKALVAGLDKFAPVHTRYVDLKNLLAYFRDIQGKNGWSQISLSKKSLRLGDDDPAVPA
IRIRLQSLGYSVPAATADSQRKYDSGLESLIRQVQGLNGLDADGIIGEQVLSFLNVTAAD
RAFQIEVNMEKLRWLPKNMEPRHVFVNLSTTEFQLFDGGREVMSFRTINGEGYRRTPVLR
NMLSFVELNPTWTAPDSIVFKDKLHILRQGEAGVKYLEDQHMKLVKKSNGEVVDATASLL
KGLSRSNFPYLLRQDPWRKNALGSIKFPLPNEWSIYLHHTSDPDLFKKDARHLSSGCVRL
EDPFKFAEYILRDNVALKSNQQQLHWSADDLESLVPPRGSNDEVPKELWEKRIHLKTPVP
VYLIYLTVARSQDGAVRFVNDIYGQDLRVAKTMKSVRHGNELF
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgaagagcttggttaagaagactttcctgattggtatgtccatgatgacgctg
gcgcctcagttcgctactgcggctttggagtctcagatcaattactacctaaatagagaa
gataccaaggacatcccgtttatgtttgttcggggttctaacttttatcttcataaaaat
acattgagtgctttatatgaaaaacgtggtttttctgcgatttgggtcgacgcaaaaggt
cgaccgaatgcaatggcagcggcagtgaaggatgcccttaagcagggagcaattttgaat
ggtcttaatcccgatgactattgggataagatgattgaaagtatttacgtatccaatacg
gatggtaaattcggtcccacatttgagttggcagtttccgaggctgttatccgttatgta
actcatctgtccacgggccgctttgatccgatggagattgatactgacatcaaacttcca
aagaaaaaatttacggagtacgcagagcttagtcaggtcatttcaagtgttgaaggacgg
cctgatgttaaagctcttgttgcaggtcttgacaagtttgcacctgtccatacccgttac
gtggacctgaaaaatttattggcttacttccgtgatattcaagggaaaaatggctggtcg
caaataagtttgtcaaagaagtctcttcgtctcggtgatgacgaccctgcagtaccagca
attcgtattcgtttgcagagcctcgggtattcagtcccggctgcaactgcggacagtcaa
agaaagtatgactctggtcttgaaagtcttatccgccaggttcaggggttaaatggtttg
gatgctgacggtattattggcgagcaggttctaagctttctgaatgtgacagcggccgac
cgtgcttttcagattgaagtgaatatggaaaagcttcggtggttgcctaaaaacatggaa
cctaggcacgtgtttgttaacctatcgactacagagtttcaactgtttgacggcggcaga
gaggtcatgagcttccgcacgatcaatggcgaggggtaccgcaggacgccggtattaaga
aatatgcttagttttgttgagttgaatccgacatggacggctccagattcgattgttttc
aaagataaactccatatcttgcgacagggtgaggccggtgtaaagtacctcgaggatcaa
cacatgaaactcgtaaagaaaagtaacggcgaggttgtggacgcgacggcttctttgcta
aagggtctgtctcgaagcaattttccgtatttattgaggcaagatccatggagaaaaaat
gctttgggctcaattaagtttccgttgcccaatgaatggtctatatatttgcatcacacc
agtgatccagatctgtttaagaaggacgctcgtcatctgagttccggttgtgtgcgactg
gaagatccgttcaaatttgctgaatatattttgcgtgacaatgtggcattgaagtccaat
caacagcagctccattggtcggcggatgatttagagagtctggtgccgccgagaggttct
aatgacgaagtgcctaaggaattgtgggaaaaacgtattcatttgaaaacaccagtacca
gtttatttgatttacttgaccgtggcgcgatctcaagatggtgcggttcgatttgtaaac
gatatctatggtcaagatttgcgagtggcgaaaacaatgaaatcagtgagacacggtaat
gaactattctaa
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