Bdellovibrio bacteriovorus Tiberius: Bdt_2130
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Entry
Bdt_2130 CDS
T02356
Symbol
ymdA
Name
(GenBank) HAD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Pathway
bbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bdt_2130 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbat03019
]
Bdt_2130 (ymdA)
Messenger RNA biogenesis [BR:
bbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bdt_2130 (ymdA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
Motif
Other DBs
NCBI-ProteinID:
AFY01815
UniProt:
K7YYN7
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All DBs
Position
2231276..2232859
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AA seq
527 aa
AA seq
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MIAMIATAIIGIVAGGGLGWALHKFFRARTLRLAREEAQDILDEANEVIELRNLEEKERI
QEIEMELWTKVEPEMLKSEGRIEDLQEVANEKKAKADAIVQEEKKKLQDREADVKVQEQA
LRGQESELGKIKDAQKALNQDLVQKLTERLGTSAEEFKTQLKNQMEEESRRRAARMIQET
EADTKEHAESEAKRILSLVIDRFARPYCAERGIGAVNFPDAHIRKLFCDPAGNNIKAVQD
ACGCDIIVEEGMDMVGVAGFDPVRREMTRRTLERIFKEKKNINPDFIRKIAENQKKELFK
NIKHDGDSLAKELKLEGLNAEIRQMMGSLRYRYSFTQNQYFHCGEVGWLAGLMAAELGID
IKKARRVGMLHDIGKSMDHTVEGGHAVIGADFIAARGEAADVVHAVKAHHFDEQPSTDHA
FLVIAADAVSGARPGARRSTIESYNQKVSELQDIARSFPGVTDCFVLSGGRECRVMVNGK
KVDDTQAMDLSRKIAARIEEECNYPGSIKVVVVRETVVTEQTRKELA
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgattgcaatgattgctacagccataattggaattgtcgccggtggtggtttgggctgg
gccttgcacaaattcttcagagcgcgcactttgcgtctggctcgcgaagaggcccaggat
attttagacgaagccaatgaagtcatcgaacttcgcaacctggaagaaaaagaacgcatc
caggaaatcgaaatggaattgtggaccaaggtggaacccgagatgctgaagtccgaagga
cgcatcgaggatctgcaggaagtcgccaacgagaaaaaagccaaagccgacgccatcgtt
caggaagaaaagaagaaacttcaggaccgcgaagctgacgtaaaagttcaggaacaggcc
ctgcgtggccaggaatctgaactgggcaaaatcaaggacgcccagaaggcgctgaaccag
gatctggtgcagaagctgaccgagcgcctgggcacttccgctgaagaattcaaaacccag
ttgaaaaaccagatggaagaggaatcccgccgtcgtgctgcccgcatgatccaggaaacc
gaagctgacaccaaagaacacgccgaatctgaagccaagcgcatcctgagcctggtgatt
gaccgtttcgcccgtccttactgcgcagagcgtggtattggtgcggtgaacttcccggat
gctcacatccgcaagctgttctgcgacccggctggaaacaacatcaaggccgttcaagat
gcctgcggttgtgacatcatcgtggaagaaggcatggacatggtcggcgttgccggcttt
gaccctgttcgccgcgagatgacccgtcgcacgctggagcgcatcttcaaggaaaagaaa
aacatcaatcctgatttcatcagaaaaattgctgagaatcagaagaaagagcttttcaaa
aacatcaaacacgatggcgactctttggctaaagaattgaaactggaaggcttgaacgcc
gagatccgtcagatgatgggttctttgcgctatcgttattccttcactcagaatcagtat
ttccactgtggtgaagtgggctggctggcgggcctgatggcagctgagctgggtattgat
atcaagaaagcacgccgcgtgggcatgcttcacgatatcggtaaatccatggaccacacc
gtcgagggcggtcacgccgtgattggtgccgactttatcgcggctcgtggcgaagcggct
gacgtggttcacgccgtgaaagcccaccactttgacgaacaacccagcacagatcatgcg
ttccttgtgatcgcggccgatgcggtttctggtgctcgtccgggcgctcgtcgttcaacg
attgaatcctacaatcagaaagtttccgaattgcaggacattgcccgcagcttcccgggt
gttactgactgcttcgtattaagtggtggtcgcgaatgccgagtgatggtgaatggcaaa
aaagtggatgacactcaagccatggatctgtcgcgcaaaattgcggcacgcatcgaagaa
gagtgcaattacccaggatcaattaaagtggtcgtggtgcgcgaaacagttgtcacagaa
caaacaaggaaagaactcgcataa
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