Bdellovibrio bacteriovorus Tiberius: Bdt_2910
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Entry
Bdt_2910 CDS
T02356
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Pathway
bbat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bdt_2910 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbat03021
]
Bdt_2910 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbat03400
]
Bdt_2910 (rpoC)
Enzymes [BR:
bbat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bdt_2910 (rpoC)
Transcription machinery [BR:
bbat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bdt_2910 (rpoC)
DNA repair and recombination proteins [BR:
bbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bdt_2910 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AFY02590
UniProt:
K7Z0N2
LinkDB
All DBs
Position
complement(3063096..3067139)
Genome browser
AA seq
1347 aa
AA seq
DB search
MIREWSFGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRMKYRGVVCEKC
GVEVTQTKVRRERLGHIELATPVAHIWFLRSLPSRIGNLLNLSLKDVEKVLYCEAHVVID
PMETTLEEGQVLTEEALQAALNEFGPSFKYGMGGEAVRDLLKKIDPEYLSRKLRLEVKDT
KSEAGIKKLTKRLRVVEAFKGSINKPEWMMLEALPVLPPDLRPLVPLDGGRFATSDLNDL
YRRVINRNNRLKRLQELNAPDIIIRNEKRMLQEAVDALLDNGRRGKTFTGPNKRPLRSLS
DMLKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQCGLPKKMALELFKPFVYNKLEEK
GLATTIKQAKRLVDQETVEVWDILADVVKEHPVLLNRAPTLHRLGIQAFEPVLHEGKAIQ
LHPLVCTAFNADFDGDQMAVHVPLSVESQVEARVLMMSTNNILSPANGKPIINPSQDIVL
GMYWLTRMRPGALGSGKAFSSVQEAQYAYETGLVDLQAVCKVRINGTLQETTVGRAILSD
IVPKEVPFNEVNVTMGKKQIAALIDKTFRLAGAKATCILADKIMEYGFKYSTAAGMSIGI
DDMVIPAAKAPMIADAEKQVTEIQQQYDEGLITDGERYNKVVDIWAQTADKIAKEGMNAI
EKQTFNVGGKEVVGPSFNPIYIMADSGARGSAAQIRQLGGMRGLMAKPSGEIIETPITAN
FREGLTVIQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVSEIDCGVEDGLEI
TPIYEAGEIVQNIGDRILGRTALKDVVDAATNEVVVRANQEITENDVKIIEGRGIDKVDI
RSALICQSKRGVCVKCYGRDLSRGATVNLGETVGIIAAQSIGEPGTQLTMRTFHLGGAAS
RAVEQSVHTSRYDGVIKLQNVHAVANRNGKLTVMNRNGSALVIDEAGRERENFKLVYGAV
LNFKEGDKVAKGQTVAEWDPYSNPIIAEVSAKIQYQDIEEGSTMQEQVDAVTGFATKVIM
ESKSSDVKPTVFLVDGAGKTLNLPGRDIPARYLIPVGAQLLVADQQEVHAGDVIAKMHRE
ASKTKDITGGLPRVAELFEARKPKEAAIISEIDGYVTFGKDVKGKQRVIVTPEVGEQKEY
LIPKGKHVAVREGEYVRAGEALMDGPTNPHDILAVLGAKALSAYLVDEIQEVYRLQGVGI
NDKHIEVIVRQMLRKVEIRDAGDSRFLAGEQVERYAYMEENDRINKEGGQPATCSPLLLG
ITKVSLSTDSWISAASFQETTKVLTEAAINSRTDHLRGLKENIIMGRLIPAGTGLTSYKR
WKVSVHEDDDIGFVALPGMTSSVQPQG
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgattcgtgaatggtcatttggtgaagttaagaagccagaaactatcaactatcgtact
ttcaagcctgaacgtgacggcttgttctgtgcgaaaatcttcggtcctatcaaggactac
gagtgcttgtgcggtaagtacaaacgtatgaagtaccgtggcgtcgtctgtgaaaagtgc
ggcgttgaagtgactcagaccaaggttcgccgtgagcgtcttggtcacatcgaattggca
actccagtagcccatatctggttcctgcgttctttgccttctcgtattggtaaccttttg
aatctttctttgaaagacgttgaaaaggttctttactgtgaagcacacgtggttatcgat
ccaatggaaactacattggaagaaggccaggtactgactgaagaagcattgcaagcggct
ctgaatgagttcggcccatccttcaaatacggaatgggtggcgaggcagttcgtgatctt
ttgaaaaaaatcgatcctgaatacctttcccgcaaacttcgtctggaagttaaagacacc
aagtctgaagctggtatcaaaaaattgactaaacgcctgcgcgttgttgaggccttcaaa
ggttccatcaacaaaccagagtggatgatgttggaagcgcttccggttcttcctcctgat
cttcgtccattggtacctcttgatggtggccgtttcgcgacgtctgacctgaatgacctg
taccgccgtgttatcaatcgtaacaaccgtttgaaacgtcttcaggagctgaacgctcca
gacatcatcatccgaaacgaaaagcgcatgcttcaagaagcagtggacgctttgttggat
aacggtcgtcgcggtaagaccttcactggtccgaacaaacgccctcttcgctccctttct
gatatgttgaaaggtaagcagggtcgtttccgtcaaaaccttttgggtaaacgtgtagac
tactctggtcgttccgttatcaccgttggacctactctgagacttcatcagtgcggtctt
ccgaagaaaatggctctcgagttgttcaaaccattcgtttacaacaaacttgaagaaaaa
ggtcttgcgaccactatcaaacaagccaagcgcttggttgatcaggaaacagttgaagta
tgggatatccttgctgacgtggtgaaagagcacccggttcttctgaatcgtgcgccaacc
ctgcacagacttggtatccaggcgttcgagcctgttcttcacgaaggtaaagctatccag
ttgcacccgctggtatgtacggcgttcaatgccgacttcgacggtgaccaaatggcagtt
cacgttccactttctgtggaatcccaggttgaagcacgcgttctgatgatgtccacgaac
aacatcctttctcctgccaacggtaaacctatcatcaatccttcccaggatatcgtgttg
ggtatgtactggttgactcgtatgcgcccaggcgcgcttggatcaggcaaagccttctcc
agcgttcaggaagcacaatacgcttatgaaaccggtctggtagaccttcaggcggtatgt
aaggttcgtatcaacggaactctgcaagagaccacagtgggtcgtgcaatcctttctgat
atcgttcctaaagaagttccgttcaacgaagtgaacgtgacaatgggtaaaaaacagatc
gcagccctgatcgacaagactttccgtcttgccggtgcaaaagcgacctgcatccttgct
gacaagatcatggaatacggcttcaagtattcaactgcagcaggtatgtccatcggtatc
gatgacatggtgatcccggcggcgaaagctccgatgatcgctgacgcagaaaaacaagtt
accgagatccagcagcagtacgacgaaggtttgatcacagatggtgagcgctacaataaa
gtggtcgacatctgggcgcagactgccgacaaaattgccaaagaaggtatgaacgcgatc
gaaaagcagacattcaacgttggtggcaaagaggttgtgggtccttccttcaatccaatt
tacatcatggctgactccggagcccgtggttccgcagctcagatccgtcagttgggtggt
atgcgtggtctgatggcgaaaccttccggtgagatcatcgagactccgatcactgcaaac
ttccgtgaaggtttgacagttatccagtacttcatctccacgcacggtgcgcgtaaaggt
ttggccgataccgcattgaaaacagcgaactccggttacctgactcgtcgtttggttgac
gttgctcaggacgttgttgtgtccgagatcgattgcggtgttgaagatggtttggaaatc
actccgatttacgaagcgggtgagatcgtacaaaacatcggtgaccgtatcctgggccgt
acagctttgaaagacgttgttgatgcagcgacaaacgaagttgtggttcgtgctaatcag
gaaatcactgaaaatgacgttaagatcatcgaaggccgtggtatcgacaaagtcgacatc
cgttctgctcttatctgtcagtctaaacgcggtgtttgcgtgaagtgctacggacgtgat
ttgtcccgtggtgcgactgtgaacctgggtgaaacagtgggtatcattgccgctcaatcc
atcggtgagccgggtacccagttgacgatgagaacgttccacttgggtggtgcggcttct
cgtgcggttgaacaatctgttcacacatcccgttatgacggtgttattaaactacaaaac
gttcatgcagtggcaaaccgtaacggcaagctgactgtgatgaatcgtaacggttctgct
cttgtgatcgacgaagcgggtcgtgagcgtgaaaacttcaagctcgtatacggcgctgtt
ttgaacttcaaagaaggcgacaaagttgccaaaggtcagactgttgcggaatgggatcca
tattcgaatccaatcatcgcagaggtttctgcgaagatccaatatcaggatatcgaagaa
ggttccacaatgcaggagcaagtggatgcggtaactggtttcgcgaccaaagttatcatg
gaatccaagtcttccgatgttaaaccaacagtgttccttgtggacggtgctggcaaaaca
ttgaatcttcctggtcgtgatatcccggctcgttacctgatcccagttggggctcagttg
cttgttgcggatcaacaggaagtgcatgcgggtgacgtaatcgcgaagatgcaccgtgaa
gcttcgaaaacgaaggatatcaccgggggtcttccgcgcgttgccgaattgtttgaggct
cgtaaaccgaaagaagcagctatcatctctgagatcgatggttatgtgacattcggtaaa
gacgttaagggtaaacaacgtgtgatcgtaactcctgaagtgggtgagcaaaaagaatac
ctcatccctaaaggtaagcacgttgctgtaagagaaggtgagtacgtaagagccggtgag
gctttgatggatggtccaacaaatcctcatgacattctggcggttctgggtgctaaagcc
ttgtctgcataccttgtagatgaaatccaagaagtttacagacttcaaggggttggtatc
aatgacaagcatatcgaagtcattgttcgtcagatgctacgtaaagtagaaatccgtgat
gccggcgacagccgcttcctggctggtgagcaagttgaaagatacgcttacatggaagaa
aacgatcgtattaacaaagagggtggccagcctgctacttgcagcccgcttcttcttggt
attacgaaagtttctttgagcaccgacagctggatttcagcagcgtccttccaggaaact
acaaaagttcttacggaagcagcgatcaattctcgtacagaccatttgcgtggcctgaaa
gagaatatcatcatgggtcgtctgattcctgcgggaactggtttgacatcttacaaacgc
tggaaagtgtctgtgcatgaagatgacgatatcggctttgttgcattgccgggtatgacg
tcttctgtacagcctcaaggctaa
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integrated database retrieval system
