Bdellovibrio bacteriovorus Tiberius: Bdt_3338
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Entry
Bdt_3338 CDS
T02356
Symbol
yfhD
Name
(GenBank) putative periplasmic binding transport protein
KO
K18691
peptidoglycan lytic transglycosylase F [EC:
4.2.2.29
]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bbat01011
]
Bdt_3338 (yfhD)
Enzymes [BR:
bbat01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Bdt_3338 (yfhD)
Peptidoglycan biosynthesis and degradation proteins [BR:
bbat01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Bdt_3338 (yfhD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
SBP_bac_3
NMT1
Motif
Other DBs
NCBI-ProteinID:
AFY03013
UniProt:
K7YZ48
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All DBs
Position
3550348..3551625
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AA seq
425 aa
AA seq
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MDEQESLAQVQSKGEIVVLTTQSPLIYSQPKRGGAFGIDHDLLENFATRYNLKLKYVVLP
DEDSVLRALSKGEGDIAAARLRTPHNMTGFLTGPAYEETYLSLYCHKKAQIQNIQDLNGK
SISLLQKDNYLGLSQRLTQLSPQVKVEIQENIKTQDLIASLAQRKNDCVIAENFSGDFYA
RYHTSIEKVTDLTAPYSLSWQLSPDNSSLLHLMQHWYQQASREDEIMRILDRYKTYLTQL
DKRDIAQFFKKIRTTLPTYKDAFRDAGREHNLPWQLIASVAYQESHWNPEARSFTGVRGL
MQLTTDTALHVGIEDRTDPLQSIWGGSKYLRSLIDRVPSHLNYKDRLALALAAYNVGWAH
LKDAQKLAEKMGRNPYSWRHMREVLPLLADPEYAAEFEYGPARGYETVDFVERVKSFYNL
MNSAG
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaacaggagagcttggctcaggttcagtccaaaggtgagatcgtggtcctgacc
acgcaaagtcctcttatatatagtcagcccaaacgcggcggtgctttcgggatcgatcac
gatcttttggaaaacttcgccacccgctacaaccttaaactgaagtacgtggtgcttccg
gatgaggactcggtgttgcgggcgctgtctaaaggcgaaggggatatcgccgcagcccgc
ttgaggactcctcacaatatgaccggcttcctgactggccctgcttacgaagaaacttat
cttagcctttactgccacaagaaggcccagatccagaacatccaggatctgaatggcaaa
agcatctcgctgctgcaaaaagacaattacctgggattgtcccaacgtctgacccagctt
tcacctcaggtgaaggttgaaattcaggaaaacatcaaaacccaggatctgatcgccagc
cttgcccagcgcaaaaatgactgtgtgatcgcagaaaacttcagcggtgatttctatgcc
cgctatcacacctcgatcgaaaaggtcaccgacctgactgccccgtactctttgagctgg
cagctttctccggacaactcaagtcttctgcacctgatgcaacactggtatcagcaggca
tcccgcgaagacgaaatcatgcgcattctggatcgctacaaaacgtacctgacccagctg
gacaagcgcgatatcgctcagttcttcaaaaaaatccgcacgacgctgccaacatataaa
gacgccttccgtgatgcgggtcgcgaacacaatctgccttggcagttgatcgcctctgtc
gcttatcaggaatcccactggaatcccgaagctcgcagtttcaccggtgtgcgtggtctg
atgcagttgactaccgacacagctttgcatgtgggtattgaagaccgcaccgatcctttg
caaagcatctggggcggctccaaatacctgcgttcattgatagaccgcgtgccttcgcac
ctgaactacaaagaccgcctggcgctggcactggccgcttacaatgtcggctgggctcac
ctgaaagacgctcagaaactggccgaaaaaatgggtcgcaatccttattcctggagacac
atgcgcgaagtgttacctttgctggctgatccggaatacgccgccgaatttgaatacgga
ccggcccgcggttacgaaacagtcgacttcgtcgagcgtgtgaaatccttctataacctg
atgaattctgccggataa
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