Bdellovibrio bacteriovorus Tiberius: Bdt_3372
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Entry
Bdt_3372 CDS
T02356
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Pathway
bbat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bdt_3372 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbat03019
]
Bdt_3372 (rhlB)
Enzymes [BR:
bbat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bdt_3372 (rhlB)
Messenger RNA biogenesis [BR:
bbat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bdt_3372 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AFY03047
UniProt:
K7ZH29
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All DBs
Position
complement(3584913..3586505)
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AA seq
530 aa
AA seq
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MNYDDCTPIQEQAIPPVLDDKDVAGLAQTGTGKTAAFVIPVMERILRARPVQGEVTEEQK
ALIEKRAYKDWKPQNFVLILVPTRELAEQVQDNINKLSVDSGLRGFAIYGGTGYDKQKEA
LKNGVEFIVATPGRLIDLYKEHLVDLKQVRAIVFDEADRMFDMGFKDDMKYILQRVPRER
QLLVFSATLNFDVLNTIYQFGSEPVEINISRDQAKADNVKDQIFHVGSDEKPQHLLSLLK
VHNPKQAIIFTNFKMSVERIAKFLVENGVPAMAISSLLTQAQRNRVIEQFKAENDMNVLV
ATDVAARGLDIKGVDMVVNYELPMDSESYVHRIGRTGRAGTTGQAFSLVGDKDIESLGRI
EDYLKHKIEVGYLENDQLLKDFKPMTSHFEGHYPKSLDRARAPREGGRGGDRGPRREGDR
GPRRERGDRGPRQDRGPRPEGQQKSAQGAGAQQTQGGGQRPDSRPKRQEGGPKRPHDGKR
GEQRPRTDQQARKPHGQQQRQGASAKKRVPMAAQKSIGQKVAGFFKRLFS
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgaactatgatgattgcaccccgatccaggaacaggccatcccgccggttctggacgac
aaagacgttgccggccttgctcagaccggaacaggtaaaactgccgctttcgtaatccca
gtgatggaacgtatccttagagcccgcccagttcagggtgaagtgactgaagagcaaaaa
gccctgatcgaaaaaagagcctacaaagactggaagcctcagaacttcgtattgatcctg
gttccaacgcgtgagttggcagagcaggttcaggacaacatcaacaagctgagcgttgat
tccggccttcgtggttttgcgatctatggcggtacgggttacgacaaacaaaaagaggcg
ttgaaaaacggtgttgaattcatcgtggcgactccaggccgtttgatcgatctgtacaaa
gaacatctggtggacctgaaacaggttcgtgcgatcgtcttcgatgaagcggaccgtatg
ttcgacatgggcttcaaagacgacatgaagtacatccttcagcgcgttcctcgtgaacgt
cagcttttggtgttcagtgcgactttgaactttgatgttttgaacaccatctatcagttc
ggttccgagccggtggaaatcaacatcagccgtgaccaggccaaagcggacaacgtgaaa
gatcagatcttccacgtgggttccgatgaaaagccccagcatcttctgtctttgctgaaa
gtgcacaatccaaaacaggccatcatcttcaccaacttcaaaatgagcgtcgagcgcatc
gcgaagttcctggttgaaaacggtgttcctgccatggcgatttcaagccttctgactcaa
gctcagcgcaaccgcgtgattgagcagttcaaagctgaaaacgacatgaacgtgctggtg
gcaacggacgttgcagcccgcggtttggacatcaaaggtgtcgacatggttgtgaactat
gaactgccgatggactctgaatcctacgttcaccgtatcggtcgtaccggtcgtgcgggc
acgacaggtcaggcgttctctttggttggcgacaaggacatcgagtctttgggtcgcatc
gaagattatttgaaacacaaaatcgaagtcggctatctggaaaacgaccagttgctgaaa
gacttcaagccgatgacttcccattttgaaggtcattatccaaaatctttggatcgtgca
cgtgcgcctcgtgaaggtggacgtggtggtgacagaggtcctcgccgtgaaggtgaccgt
ggtccacgtcgtgaacgtggtgatcgcggacctcgtcaggatcgtggtcctcgtccagag
ggtcagcagaaatctgcacaaggtgcaggtgctcagcagactcaaggcggaggccagcgt
ccagacagccgtccaaaaagacaagagggtggtccgaagcgtcctcacgatggaaaacgt
ggcgaacaaagaccaagaacagaccagcaggctcgcaagccgcacggtcagcagcagcgc
caaggggcctcagcgaagaagcgtgtgccaatggcagcgcaaaaatccatcggccaaaag
gtcgcaggattcttcaaacgtctgttctcttaa
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