Bacteroidetes bacterium: AEM51_12815
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Entry
AEM51_12815 CDS
T04336
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
bbau
Bacteroidetes bacterium
Pathway
bbau02020
Two-component system
bbau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bbau00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AEM51_12815
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AEM51_12815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbau03021
]
AEM51_12815
Transcription machinery [BR:
bbau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AEM51_12815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
MarR
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AMS27769
LinkDB
All DBs
Position
complement(2914555..2916033)
Genome browser
AA seq
492 aa
AA seq
DB search
MLKQGLQQKLLQKLSPQQIQFIKLLQLNTVDLQQRIDDELIENPALVKSEDEDAAAPLES
DIKEAETADDGQEDNVSVEDYLTDETLDIKEYVNDDYDSEGFHLSDEGPDDDKKEMPLAE
TTSFHELLAEQFNAIAENEREQIMGNQIIGTIDDDGYLRRPLEAIQNDLAFSQNIEASID
ELKTCLVKIQALEPAGIAATSLQECLLLQLKRKDHARDGVRIAEVLLRDYFDDFTKKHYE
KLTRSLKITDEQLKDAIKVITHLNPKPGESVSDSKPQYITPDFILVENEGKLEVLLNSRN
APDLRISRSYMETLKAYDKTEKPGKELKQTVQFIKQKLDGAKWFIDSIKQRQNTLLMTMN
AILQQQYAYFETGDETKMRPMILKDIAEKVGMDISTISRVANSKYVQTDFGTIPLKFFFS
EGIATDDGEEVSSREVKRILKDAIEAEDKHKPLPDEKLMEILKDKGYNIARRTVAKYREQ
LNIPVARLRKEV
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacagggattacaacaaaaactgctgcaaaagctgtcgccacagcaaatacaa
tttattaaattgttgcaactcaacacggttgatttacagcaacgaattgatgacgaactc
attgagaacccagcattggtaaagtcggaagacgaggatgcagctgctccgctcgagtcg
gatattaaagaggctgaaacggcagacgatgggcaagaggacaatgtttcggtggaagat
tatttaacggatgaaaccctcgatatcaaggaatatgtaaatgatgattatgattcggag
ggatttcacctgagcgatgaaggtcctgatgacgataaaaaggaaatgcccctggccgaa
acaactagttttcatgagctattagcagagcagtttaatgccattgccgaaaatgaacgc
gaacaaataatgggcaaccaaatcatcggcaccattgatgatgatggttatttgcgcaga
ccattagaagccattcaaaacgatttggcgttttcacaaaacattgaggcaagtattgat
gaacttaaaacctgtttggtaaaaattcaagcactagagcctgccggtattgccgctact
agcttacaagagtgtttattgttgcaactaaaacgtaaggaccacgcacgtgatggggtg
cgaatagctgaggttttgctgcgcgattacttcgatgattttaccaaaaagcactacgaa
aaacttactcgttccctcaaaattacagatgagcaacttaaagatgccattaaggtaatt
acacaccttaatcctaaaccgggtgaatctgtttccgattcgaagccacagtatattaca
cccgattttattttggtggaaaatgagggcaaacttgaagtgctactcaactcgcgcaac
gctcccgatttgcgcattagccgcagttacatggaaacactaaaagcttatgacaaaaca
gaaaagcccggtaaagaactgaaacaaaccgttcagtttattaagcaaaaattggatgga
gctaagtggtttatcgattccattaaacaacgtcagaatactttgttgatgacgatgaat
gcgattttgcagcagcagtatgcctacttcgaaacgggtgacgaaaccaaaatgcgcccc
atgattttgaaagatattgccgaaaaagttggaatggatatttctactatttcgcgagtt
gccaatagcaaatatgttcaaactgattttggcaccattccgctaaagttcttttttagc
gaaggtatagcaaccgatgatggcgaagaagtaagtagccgcgaggtgaaaagaattttg
aaagatgccattgaagcagaagacaaacacaagccgttgcccgatgaaaaattgatggaa
atactgaaagacaaaggatacaatattgcccgcagaaccgtagctaaataccgtgagcaa
ttaaatattccggtagcaaggttgcgcaaggaggtgtag
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