Burkholderiales bacterium YL45: A4V04_02790
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Entry
A4V04_02790 CDS
T04607
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbay
Burkholderiales bacterium YL45
Pathway
bbay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V04_02790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbay03019
]
A4V04_02790
03009 Ribosome biogenesis [BR:
bbay03009
]
A4V04_02790
Enzymes [BR:
bbay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
A4V04_02790
Messenger RNA biogenesis [BR:
bbay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A4V04_02790
Ribosome biogenesis [BR:
bbay03009
]
Prokaryotic type
rRNA processing factors
A4V04_02790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
HTH_58
Motif
Other DBs
NCBI-ProteinID:
ANU65473
LinkDB
All DBs
Position
complement(616888..619956)
Genome browser
AA seq
1022 aa
AA seq
DB search
MKRMLFNATHPEELRVCIVDSQQLIDMDLESSAREQRKSNIYKGIITRVEPSLEACFVDY
GEERHGFLPFKEISKAYFNEGVDYRTATIKEAVSEGMELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEEREELKENLSKLQYPKGMSLIARTAGIGRSVEELQ
WDLDYLLKLWEAIDDAAKPQYDDGKGNIVDTATINGRPLKRVNPAPFLIVEESNLVIRAI
RDYFQPEISEILIDTDEIYEQARQFMSHVMPDMVDRVKRYHDDIPLFTRFLVEKQIETAY
SRTVPLPSGGAIVIDHTEALVAIDVNSAKSTRGADIEETAFKTNMEAAEEVARQMRLRDL
GGLIVIDFIDMENPNNQRELEQKMKEELKNDRARVQAAKISRFGLMEISRQRLRPTLYEG
SHITCPRCNGVGVIRDTESSAIQVLRILQEEALKDGTAAMQAQVPVDVGTFLLNEKRNDI
AKIESRHKIKIFLIPNKNLETPHYQIERIRPDDERLDSVLPSYERVESFEAETNEPYSRA
PQQHTSDRPKQVPVIKGLPAREEAPKHVDSKSKAQPKENKQSFWQKLISFFTGSEEVTEE
QVKKEKAKTRKEQKAAKGQERKAKPSRAERKNAGKGRDQAKQERAERSEKTEKPSRSASK
AEGKRDRTEDRRTSKKAEAVPQQTAAESKPEEVKSQRRAEKEAQPTKRSRETAKVPAIAP
ANDETEVKAAPLAEAVKPQTETIDVSVPAPDAAEADKNIKVSAPAAETAPVRKPRRSRKE
KEGLFDQVETPKPPVAVAPVTAAVEVAVMDQVNAFVPHQEAATVSAPSAEVPAVNVADLS
LEEKPEKQFRHNPYRTRRGRGERKQQAEKSTEQAQPVAEAKPAEATPAPQPEVPSLKEIQ
KPAHEISFKAESSIPAEPVKEEPKQAAEVKQEPVKAPAALTPVVATVPVQAPTPAKTAEE
KPAAKPAKKAGASAEPKLELVSTKVTDEPTVEVQKPKLGRKRIKKTVSDEPFVLEQVQTT
AK
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttatttaatgccacgcatcctgaggagctgcgtgtctgtatcgttgac
agccaacaactgatcgacatggatctggagtcgtctgcccgcgaacaaagaaagtccaac
atctacaaaggtattattactcgtgttgaaccctctctggaggcctgcttcgtagactac
ggagaagaaagacacggctttttgccttttaaagaaatctctaaagcctatttcaacgag
ggagtcgactacagaacagccactatcaaggaagctgtttccgaaggcatggaactcatc
gttcaagttgaaaaagaagaaagaggaaacaagggcgctgctctgacgaccttcatttct
ttagcaggccgctatcttgtcttaatgcccaacaatcctcgcggaggcggcgtcagccgc
cgcattgaaggcgaagaaagagaagagctcaaagaaaacctcagcaagcttcagtatccg
aaaggcatgagccttatcgctcgtaccgccggtatcggcagaagcgttgaagagcttcaa
tgggacttggattatcttcttaaactgtgggaagcgatcgatgacgcagctaagccgcag
tacgatgacggcaaaggcaacatagtcgacaccgctaccatcaacggcagacctttgaag
agggtcaatccggctcctttcttgatcgttgaagaaagcaatctggttattcgcgccatc
cgcgactacttccagccggaaatcagcgaaatcctcattgataccgacgaaatctatgaa
caggcccgtcaatttatgagccatgtcatgccggatatggtcgacagagtcaagagatat
cacgacgacattcctctgtttacccgctttttggtggaaaaacagattgaaacagcttat
tcccgcacagttccccttccctccggcggtgccattgttatcgaccatacggaagctttg
gtggctattgacgttaactcggccaagtccaccagaggggccgatattgaagagacagct
ttcaagaccaatatggaagctgctgaagaagttgcccgccagatgaggctgcgcgacctc
ggcggtttaattgttatcgacttcattgatatggagaatccgaacaatcagagagagctt
gagcagaagatgaaggaggagctcaaaaacgacagagcccgcgtacaagctgccaagatt
tcccgcttcggcttaatggaaatttcccgtcaaagactgcgtcccacattgtatgaaggc
agccacattacctgcccgagatgcaacggcgtcggtgttatccgcgacacagaatccagt
gccattcaagttctccgtatccttcaggaagaagctctcaaagatgggacagccgctatg
caggctcaggtaccggttgatgtcggcacattccttctcaatgaaaagagaaacgatatt
gccaagattgaatctcgtcataagatcaagatcttcttgattcctaacaagaacttagaa
actccccattatcaaatcgaaagaattcgtcctgatgatgaaagacttgattccgttctt
ccaagctacgaaagagtagaaagctttgaagccgaaaccaatgagccctattccagagct
cctcaacagcatacttcggacagaccaaagcaagttcctgttattaaaggacttcctgca
cgtgaagaagctccgaagcatgttgactccaagagcaaagctcaaccgaaagaaaataaa
caatcgttctggcagaaactcatcagtttctttaccggaagcgaggaagttactgaagaa
caagttaagaaagaaaaagctaaaacccgcaaagagcagaaggctgccaaaggtcaggaa
agaaaagctaaaccttccagagccgaaagaaagaacgccggcaaaggcagagatcaggca
aagcaagaaagagccgaacgctccgaaaaaaccgaaaagccgtcccgttccgcctcaaaa
gccgaaggcaagagagacagaactgaagacagacgcacttctaagaaagccgaggcggtt
ccacagcagactgcagcagaaagcaaaccggaagaagtcaaatctcagagacgtgctgag
aaagaggctcaaccgacaaaacgctccagagaaaccgctaaagttcctgctattgctccg
gccaacgatgaaacagaagttaaagcagctccattagccgaagccgttaaacctcaaact
gaaactattgacgtttccgttccggcccctgacgctgctgaagctgacaagaacatcaag
gtctctgctcctgcagctgaaacagctccggtcagaaagccaagacgctccagaaaagaa
aaagaaggactttttgaccaggttgaaactccgaaaccgccggttgccgtagctccggta
actgccgcagttgaagtagccgttatggatcaggtgaatgcttttgttccgcatcaagaa
gcagctaccgtttccgcaccttccgcagaagttccggctgttaatgttgccgacctttct
ctcgaagaaaagcctgaaaagcaattcagacacaacccttacagaacccgcagaggcaga
ggcgaaagaaagcagcaagcagagaagagcactgaacaggcgcaaccggttgctgaagca
aaacccgcagaagctacgccggccccgcagcctgaagtaccttctttgaaggaaattcag
aaaccagcgcatgaaatcagcttcaaggcagaatcttccatcccggctgaaccagttaag
gaagaaccgaaacaagcggctgaagttaaacaggaaccggtaaaagctcctgcagcactc
actcctgtagtggccactgtcccggtacaagctcccactccggcaaaaacagccgaagaa
aagccagctgctaagccggcaaagaaagctggagcatctgcagaaccaaaacttgagctc
gtctctaccaaagtaactgatgaacctactgttgaggttcagaaaccaaaattaggcaga
aagagaatcaagaaaacagtttctgacgaaccgttcgttttagaacaagtccagacaaca
gctaaataa
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