Burkholderiales bacterium YL45: A4V04_07015
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Entry
A4V04_07015 CDS
T04607
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bbay
Burkholderiales bacterium YL45
Pathway
bbay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A4V04_07015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbay03021
]
A4V04_07015
03019 Messenger RNA biogenesis [BR:
bbay03019
]
A4V04_07015
Transcription machinery [BR:
bbay03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A4V04_07015
Messenger RNA biogenesis [BR:
bbay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A4V04_07015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
OB_RNB
NACHT
AAA_25
AAA
Mor
AAA_5
Motif
Other DBs
NCBI-ProteinID:
ANU66195
LinkDB
All DBs
Position
1541844..1543106
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AA seq
420 aa
AA seq
DB search
MHLSELKQKHVSELLDIALELDVENASRLRKQELMFAILKKRAKAGEQIFGDGTLEVLPD
GFGFLRSPVSSYLASPDDIYISPSQIRRFNLHTGDTVEGEVRTPKDGERYFALVKVDKVN
GLPPEELKHRILFENLTPLFPDEPLKLERDIRSEENLTGRIIDIIAPIGKGQRALLVASP
KSGKTVLMQHIAHAITANYPDVVLMVLLIDERPEEVTEMERSVKGEVIASTFDEPATRHV
QVAEMVIEKAKRLAESKKDVVILLDSITRLARAYNTVVPTSGKVLTGGVDANALQRPKRI
LGAARKLEEGGSLTIIATALNETGSRMDDVIYEEFKGTGNMEIHLDRNLSEKRVYPAINV
RKSGTRREELLLEPSVLQKTWILRKILYEMDEIQAMEFLVDRMKPTKNNAEFFEMMGRRG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctttcagaactcaagcagaaacacgtttccgagctattagatattgctttggaa
ttagatgttgaaaatgccagccgtcttcgcaagcaagaattaatgtttgcaatcttgaaa
aaaagagcaaaggccggtgaacaaatttttggtgacggcaccttagaagttttacctgat
ggattcggttttttacgttctcccgtttcttcctatcttgccagccctgacgacatttac
atctctccttctcaaatccgccgcttcaatctccataccggcgacacagttgaaggtgaa
gtcagaactccaaaagacggagaacgctactttgcgttagttaaagttgataaggttaac
ggtcttcctccggaagaactcaagcacagaattcttttcgaaaatctgactccgttattc
cccgatgagcctctgaaacttgaaagagatattagaagcgaagaaaatctaaccggcaga
atcatcgacatcattgctccgattggtaaaggccagcgcgccctgttggttgcctcaccg
aagagcggtaaaacagttttgatgcagcacattgcacacgctattaccgccaactacccg
gatgttgttctgatggttcttctgattgatgaacgtccggaagaagttacggaaatggaa
cgttccgttaaaggtgaagttattgcgtccactttcgatgaacccgcaactcgtcatgtt
caagtggccgaaatggttattgaaaaagccaaacgcttggcagaaagcaaaaaagacgtt
gtcattcttcttgactctattacacgtctggccagagcctacaacaccgttgttccgact
tccggcaaggttttaacaggcggtgttgatgccaatgctcttcaaaggcccaaacgcatc
ctcggtgctgcccgtaaattagaagaaggcggttcgctcaccattattgctactgctctc
aacgaaaccggcagccgaatggatgacgttatttatgaagaatttaaaggtaccggcaac
atggaaatccatcttgaccgcaacctgtctgaaaaacgtgtttacccggctattaacgtc
cgtaagagcggtacacgccgtgaagaacttcttcttgaaccttccgttctgcagaaaact
tggatccttcgtaagattctttatgaaatggatgaaattcaggccatggaattcttggtt
gaccgtatgaaaccaactaagaacaatgccgagttctttgagatgatgggcagacgaggt
taa
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