Burkholderiales bacterium YL45: A4V04_11405
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Entry
A4V04_11405 CDS
T04607
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbay
Burkholderiales bacterium YL45
Brite
KEGG Orthology (KO) [BR:
bbay00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbay03016
]
A4V04_11405
Enzymes [BR:
bbay01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4V04_11405
Transfer RNA biogenesis [BR:
bbay03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4V04_11405
Prokaryotic type
tRNA splicing ligases
A4V04_11405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANU66963
LinkDB
All DBs
Position
2535663..2537147
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AA seq
494 aa
AA seq
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MLKRKDLDETPIFKTEDLRNAFYEALHEAYRVGKSDVELKKALKQLASALKPTKVLSGDL
KEIFAVAAEKLEQSRANRINFCERKEKAPWKLWGTEKVEAKALEQMDDAVSLPISVGGAL
MPDAHQGYGLPIGGVLATKGAVIPYAVGVDIACRMRISILDVPCEEFERDRRRFGEVLLR
ETRFGVGIAFDPGMRVHEVMDDPLWKKPGVLKENFQKARSQLGTSGHGNHFVEFGKLTVE
ADIDEPTLKIKAGTYTALLSHSGSRGLGQHVANFYSELAAFLHPELPENLKRLSWLELDS
EEGKDYWEAMELCGRYAAANHELIHKHVIAALGCGVLGYVENHHNFAWKEEFNGEEVIVH
RKGATPAGEGKLGVVPGSMGTPGFIVRGKGNPESFNSCSHGAGRVMSRAAAYRNLKREDM
KNFLRAREVTLIGGTLDESPEVYKDINKVIAGQTDLVDVLAKFEPKVVRMAEEKAQWTQR
RNKKKAAGEAEVCM
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaagaaaagatttggatgagactcccatttttaaaacagaagacctgagaaat
gctttttatgaggcactgcatgaggcttatcgcgtcggtaagtctgacgttgaactaaaa
aaggcgttaaagcaattagcctcagcattaaagccgacaaaggttcttagcggcgatctc
aaggagatttttgcagttgctgctgagaaattagaacaatccagagccaatagaattaac
ttttgtgagagaaaagagaaggctccttggaaactttggggcacggaaaaagttgaagca
aaggctttggaacaaatggatgacgctgtcagtctgccgatttctgtgggaggggccttg
atgccggatgcacatcaaggctatggattgccgatcggcggagtactagcaacaaaaggc
gccgtcattccttatgcagtaggcgtagatattgcgtgccgcatgagaatatcgattttg
gacgttccttgtgaagagttcgaacgagatagaagaaggttcggcgaggtccttttgcgt
gagactcgtttcggagtcggaatcgcctttgatccaggaatgagagtccatgaggttatg
gatgatcctctgtggaagaaaccgggcgttttgaaagagaatttccagaaagccagatct
caactaggaaccagcggtcacgggaaccactttgttgaattcggcaaacttacggttgaa
gccgatattgacgaaccaacactgaaaataaaagcgggcacttacacagctttgctttct
cattcgggcagccgaggacttggtcagcatgtcgctaatttttattccgaacttgcagca
tttttacatccggaattgccggaaaacttgaaacgactctcttggttggagttggattca
gaggaaggaaaagactactgggaggcaatggaactttgcgggcgatacgcagcggccaat
cacgaattgattcacaagcatgttattgccgcccttggatgcggtgttctcggatacgtt
gaaaaccaccacaactttgcttggaaggaagagttcaacggagaagaggtgattgttcac
aggaaaggagcgactccggctggagaaggaaaactgggagtggttccaggttccatggga
acgccgggatttattgtcagaggcaaaggcaatccggaatcttttaattcctgttctcat
ggcgcaggccgagttatgagtcgtgccgcagcatatagaaatctcaaaagagaggatatg
aagaattttcttcgcgcaagagaggtgacgctgattggcggtactttggacgagtctcct
gaggtgtacaaggacattaataaagtgatagcaggtcagactgacttggtcgatgttctg
gcaaagtttgagccgaaggtcgtcagaatggcggaagaaaaggctcaatggactcaaagg
cgcaataaaaagaaagcagcaggtgaggcggaagtctgtatgtag
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