Bifidobacterium animalis subsp. lactis BB-12: BIF_00713
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Entry
BIF_00713 CDS
T01840
Name
(GenBank) HRDC domain-containing protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bbb
Bifidobacterium animalis subsp. lactis BB-12
Brite
KEGG Orthology (KO) [BR:
bbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbb03016
]
BIF_00713
Enzymes [BR:
bbb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
BIF_00713
Transfer RNA biogenesis [BR:
bbb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
BIF_00713
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
ADC86095
LinkDB
All DBs
Position
complement(1238041..1239342)
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AA seq
433 aa
AA seq
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MDSVNKEPVLQTEPKEGVPEVTDTLAGFELICEQYAAVNTPLATDAERASGYRYGHEDWL
IQFKRDGAPIALLDPIALDEQGVDWNAFNEAVGDAEWILHDSRQDLPGFAQIGLKPRRLF
DTEIAAKLLGLHRVGLAYVTAHFLGITLAKEHSAADWSYRPLPRDWRNYAALDVELLSDL
ERAMTHELKRQGKWEWAQEEFDYALHEGLQPPKPHPVPWMRISHINVLQRDRRGLAVAKA
LWTERDRLAREYDISPSLLLADSAIIEAAQRKPHNASQFRAVRSLNERVRMHLGNEQDKM
FERYAPIQRKVKPSLWKRTIQEALDLPSDELPELPGKAAGHGEDVVNAPRSAKFWQTHEP
KRYRQLQRCKAVLNQISQDTCTPTDVLLKPQILRNLCWTDHPHRRDVAQFLAQQGARPWQ
VDLLSESLSRAIM
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttggattcggtgaacaaggaaccggtgttgcagaccgagccgaaggaaggggttcccgaa
gtcaccgacaccttggctggcttcgaactcatctgcgaacaatacgcagcggtgaacacc
ccactggccaccgatgccgaaagggccagtgggtaccggtacggccacgaggactggctc
atccaattcaaacgcgacggtgcaccgatagcgctgctcgatccgatcgccctcgatgaa
cagggtgtggattggaatgcgttcaatgaggctgtgggcgacgcggaatggattctgcac
gattcacgtcaggacctccccggattcgcccagattggcctgaagccgcgccggctgttc
gataccgagatcgccgccaagctattggggctgcatcgggtcggcctcgcctatgtgacg
gcgcatttccttggcatcacgctggccaaggagcattcggcagccgattggtcataccgc
ccgttgcctcgcgattggcgcaactatgccgcactcgacgtcgaattgctctccgatctc
gagcgggcaatgacgcatgagctgaaacggcagggcaagtgggaatgggcgcaggaggag
ttcgattatgccctgcacgagggattgcagcctcccaaaccgcatccggtgccgtggatg
cgcatatcgcatatcaatgtgctgcaacgcgaccgtcgaggactcgccgtggccaaggcg
ctatggaccgaacgggaccgactcgcccgcgaatatgacatctcgccatcgttgctgttg
gcggattccgcgatcatcgaagcggcacagaggaagccgcacaatgccagtcagttccgt
gcagtgcgctcgctcaacgaacgggtgcgcatgcatctgggcaacgagcaggacaagatg
ttcgaacgctatgcgcccatccagcgcaaagtcaagccgtcgctatggaaacggacaatc
caggaggcgctggacctgccttccgacgagcttcccgagcttcccggcaaagcggctggt
cacggtgaggacgtggtgaatgcgccacggtctgcgaaattctggcagacccatgagccc
aaacggtaccggcagctccagaggtgcaaggccgtgctgaaccagatctcgcaggacacc
tgcacccctaccgacgtgctgctcaagccgcagatcctgcgcaacctatgctggacggac
catccacatcgtcgtgatgtggcccaattccttgcgcaacaaggcgccagaccatggcag
gtcgacttgctcagcgagtcgctgtcccgcgctatcatgtaa
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