Bifidobacterium animalis subsp. lactis BB-12: BIF_00801
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Entry
BIF_00801 CDS
T01840
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbb
Bifidobacterium animalis subsp. lactis BB-12
Pathway
bbb03030
DNA replication
bbb03430
Mismatch repair
bbb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BIF_00801 (dnaE)
03430 Mismatch repair
BIF_00801 (dnaE)
03440 Homologous recombination
BIF_00801 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbb03032
]
BIF_00801 (dnaE)
03400 DNA repair and recombination proteins [BR:
bbb03400
]
BIF_00801 (dnaE)
Enzymes [BR:
bbb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BIF_00801 (dnaE)
DNA replication proteins [BR:
bbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BIF_00801 (dnaE)
DNA repair and recombination proteins [BR:
bbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BIF_00801 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
OB_MCM10
tRNA_anti_2
FAM25
DUF5487
Motif
Other DBs
NCBI-ProteinID:
ADC84611
LinkDB
All DBs
Position
complement(1420543..1424109)
Genome browser
AA seq
1188 aa
AA seq
DB search
MTNSADFVQLHNHTHYSLLDGASKIPDLVKYTKELGMGAVGITDHGNMHGAYEMYTEAVK
QDVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTLWAEDDEGLRNLI
RASSVANLEGRVMRYPRMDKEVLSTYSKGVICGSGCPSGIVQTRLRLGQFDEALRAAGEL
QDIYGKDNFFIELMDHNLEIERKVTKDLLEIAKKLGAPLLATNDSHYVHEEDAGAQDAML
CINSGSHLDDPDRFKFDGEGYYMRSAQQMRELFRDLPEACDNTIEVAERCNVMFDDHEDG
AFMPKFPCPEGWDETSLFLKKVEEGLERRYEGNVPAHVLAQADYECGVICQMQFPGYFLV
VADYIQWAKDHGIMVGPGRGSAAGSMVAYAMGITELDPLEHGLIFERFLNPERVSLPDID
VDFDPEGRLKVIEYCGDKYGHDKVAQCVIYGTIKTKQALKDSARIMGYEFSMGELVTKAL
PPAATGGKDVPLHDIFDPGAKRYAEAREYRELYESNPDAKRITDEAMGIEGLIRQTGVHA
CATIMGSEPITDTSPLLERTDGTVTTTFEYHTCETLGLVKMDFLGLSNLTVIGDTLRNIE
ANGKEPIDHTKIPLDDKETYELLSRGDTLGVFQLDSDGMRALLKQLKPDNFNDISALIAL
YRPGPMSMDSHTNYAKRKNGLQKIEPIHPELAEPLKEVLDETYGLIIYQEQVQSAARILA
GYSLGKADVLRRAMGKKKPEVLAKEQVPFFEGMKEHGYSREAAQAVWDVLVPFSGYAFNK
AHSAAYGLISYWTAYLKTHYPAEFMAALLQGASTNKDKTALYLGEARRMGIKVLSPDVNE
SVYAYSAVGDVVRFGLGAIRNVGEKAVADIIAERQGSHGRYVNFMDFIRRVPLTALNRRL
VESLIKAGAFDSIDPNRRALYQIHEAAIDSVTDLKRKQATGQFDLFADLDAGADDGEAEA
LGDVSISVPDVEEWDKKTKLNFEREMLGLYVSDHPLSGMQSVLASLRDMSIAQLIDRAPT
MPERSQVMVAGLITNVDSRVSKKGNRWAIVTIEDMESSIQCLLFGKVYEAHAAELAIDTI
VQVRGMVEARDETISLRATDLMVPVIEAGEDRPVFVQLPAHALDMQRLEQFSQILSNHPG
ACEVRLAIVDDNGGVTLMTLGDRFRVRRETGLFADIKVLFGANALPMI
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgaccaattccgctgatttcgtgcagttgcacaaccatacgcattattcgttgcttgat
ggtgcatcgaagattcccgatctggtgaagtacacgaaggaattgggaatgggtgccgtg
ggcatcacggaccatggcaacatgcatggcgcgtatgagatgtacaccgaggcggtgaag
caggatgtcaagccgatcatcggcatcgaggcttatgtgacgccggagacggcgaggcaa
gacaaatcgcgcgtgcattggggcacggaggcgcaacggcgtgatgatgtgtccggtgga
ggcctgatcacgcatttgacgctgtgggccgaggacgacgaaggattgaggaacctgatc
agggcctcttcggtggcgaatctcgaaggacgtgtgatgcgctatccgcgtatggacaag
gaggtgctctccacctacagcaaaggcgtgatctgcggttcgggatgcccgtcaggcatt
gtgcagacccgtttgcgcctcggtcagttcgatgaggccttgcgtgcggcgggtgagttg
caggacatctatggcaaagacaatttcttcattgagctgatggaccataatctcgagatc
gagcgcaaggtgacgaaggacctgcttgagatcgcgaagaagctcggtgcgccgctgctg
gccacgaacgattcgcattacgtccacgaggaggatgctggcgcgcaggacgcgatgctg
tgcatcaattcaggctcgcacctggatgatccggaccggttcaagttcgatggagaaggg
tattacatgcgttccgcgcagcagatgcgcgagctgttccgcgacctgcccgaggcgtgc
gacaatacgatcgaggtggcggaacgttgcaatgtgatgttcgacgaccacgaggacggc
gcgttcatgcccaagttcccatgcccggagggttgggacgagacctcgctgttcctgaag
aaagtggaggagggcctcgaacggcggtacgagggcaatgtgccggcgcatgtgctggcg
caggcggattacgagtgcggtgtgatctgccagatgcaattcccaggctacttcctggtg
gtggctgattacatccaatgggccaaagaccatgggatcatggtggggccgggccgtggc
tccgcggcaggatcgatggtcgcctatgcaatgggcatcaccgagctcgatcccctggag
catggtctgatcttcgaacggttcctgaacccggagcgcgtgtcgctgccggatatcgac
gtggacttcgacccggagggccgtctgaaggtgatcgagtactgcggcgacaaatacggg
cacgacaaggtggcgcaatgcgtgatctacggcacgatcaagacgaagcaggcgctcaag
gattcagcgcgcatcatgggctacgagttctcgatgggcgagttggttaccaaggcgttg
ccgccggcggcaacgggtggcaaggacgtgccgctgcacgacattttcgatccaggtgcg
aaacgctatgcggaggcgcgtgaataccgcgaattgtatgagtcgaatcccgatgccaag
cgaatcaccgacgaggcgatgggcatcgagggcctgattcgccagacgggtgtgcacgca
tgcgccacgatcatgggctcggagccgatcactgacacgtcgccgctgctggagcgcacg
gatggcacggtgacgacgacattcgaataccacacgtgtgagacattgggtctggtgaag
atggacttcctgggtctgtccaacttgacggtgatcggtgacacgctcaggaacatcgag
gccaacggcaaggaaccgattgaccatacgaagattccgctcgacgacaaggagacatac
gaactgctgtcgcgcggcgacacgctgggtgtgttccagctcgattccgacggcatgcgt
gcgctgctcaagcagctgaagccagataacttcaacgacatctcggcattgatcgccctc
taccgtccgggcccgatgagcatggactcgcatacgaactacgcgaaacgcaagaacggg
ttgcagaagatcgagccgatccatccggagcttgccgagccgctcaaggaggtgctcgac
gagacctacggcctgatcatctaccaagaacaggtgcaatccgccgcccgtattctggcc
ggctattcgctgggcaaggccgacgtgctcaggcgcgcgatgggcaagaagaagcccgag
gtgctggccaaggaacaggtgccgttcttcgaaggcatgaaggagcacggctattcccgc
gaggcggcgcaggcggtgtgggacgtgctcgtgccgttctcgggctatgcgttcaacaag
gcgcattccgccgcctacgggctcatctcgtattggaccgcctatttgaagacgcactat
ccggccgagttcatggccgccctgttgcaaggcgcctccacgaacaaggacaagaccgcc
ctgtacctaggcgaggcgcgccgcatgggcatcaaggtactctcgccggatgtcaacgaa
tccgtgtacgcctactccgccgtcggtgatgtggtgcgtttcggactcggtgccatcagg
aacgtgggtgaaaaggcagtcgccgacatcattgccgagcgtcagggcagccacggcagg
tacgtcaacttcatggacttcattcgccgtgtgcctctgaccgcactcaataggcggttg
gtcgaatcgttgatcaaggcgggtgccttcgactcgatcgaccccaaccggcgtgccctc
taccagattcacgaggccgcgatcgactcggtcaccgacctcaaacgcaagcaggccact
gggcagttcgacctcttcgccgacctcgacgccggtgccgacgatggcgaggccgaagcg
cttggcgacgtgtcgatcagcgtacctgacgtggaggagtgggacaagaagaccaagctc
aacttcgaacgcgaaatgctgggcctgtatgtgtccgaccacccgctttcaggcatgcag
tccgtgctcgccagcctgcgtgacatgtccatcgcgcaactgatcgaccgtgctcccacg
atgcccgagcgcagtcaggtcatggtcgccgggctcatcaccaacgtcgactcacgcgtc
tccaagaaaggcaaccgatgggcgatcgtgacgattgaagacatggagagctccatccaa
tgcctgctgttcggcaaggtgtacgaggcgcacgcggcggaactcgccatcgacacgatc
gtgcaggtgcgtggcatggtcgaggcacgtgacgagacgatttcgttgcgcgccaccgac
ctcatggtgcccgtcatcgaagccggtgaggaccgtcctgttttcgtccagctgcctgcg
cacgccctcgatatgcaacggctcgaacagttctcgcagatcctctccaatcatcccggt
gcctgcgaggtcaggcttgccatcgtcgacgacaatggcggcgtgaccctcatgaccctc
ggcgatcgcttccgtgtgcgtcgtgagaccggcctgttcgccgacatcaaggttcttttt
ggcgccaacgcactgcctatgatctga
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integrated database retrieval system
