Bifidobacterium animalis subsp. lactis BB-12: BIF_01023
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Entry
BIF_01023 CDS
T01840
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbb
Bifidobacterium animalis subsp. lactis BB-12
Brite
KEGG Orthology (KO) [BR:
bbb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbb03032
]
BIF_01023 (topA)
03400 DNA repair and recombination proteins [BR:
bbb03400
]
BIF_01023 (topA)
Enzymes [BR:
bbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BIF_01023 (topA)
DNA replication proteins [BR:
bbb03032
]
Prokaryotic type
DNA Topoisomerases
BIF_01023 (topA)
DNA repair and recombination proteins [BR:
bbb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BIF_01023 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Terminase_5
SDR-like
DUF6429
GerE
Motif
Other DBs
NCBI-ProteinID:
ADC85245
LinkDB
All DBs
Position
260155..263115
Genome browser
AA seq
986 aa
AA seq
DB search
MTTGSKLVIVESPAKAKKIGGYLGDGYTVLASVGHIRDLAQPSQVPADEKAKFGKFGVDV
NDGFKPYYIVGPEKKKTVSELRSALRNASELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITPEAIRASLEHTREVDNNMVDAQETRRVLDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRAPYWDVVATLCAPDALGEPTDFESRMIALNGTRLATSKDF
KSDGTLTDAARTDGVVQLGESQAGDLADALADARFRVISVEKKPYRRRPQPPFTTSTMQQ
AAGNRLGMSSRQTMRAAQSLYENGYITYMRTDSVTLSHEAIEAARESVSKNFGSQYLSEK
PKQYATKTAGAQEAHECIRPAGSHFRDPSQLATLPPDQLKLYTLIWQRTLASQMADATGS
TATARFAASAGGLGEATFQSSGTVIEFPGFMRVTGERGGSGKKGEESASLPPLAESAELP
AKSVLADGHETQPPARYTEASLVKTLEAKEIGRPSTYANIISTIIDRGYVYERGRALIPS
WLAFAVTRLLETKFPKYVDYQFTADMENGLDQIAHGNETGREWLTQFYFGSGADSARSAD
EAHEGLQRQVAQLGEIDAREINTIPIGDGIHVRVGRYGPYLEDTKDLDAEGNPKRASIPD
TIAPDELTVGEARKLIASNAGGPRVLGTDPATGGTVEVRNGRFGPYVALVAPESAHESAP
TGKKKAAEPKPKMASLFKSMKPETVTLDDALRLLSLPRTVCTYDEVDAKTGETVSVTISA
SNGRYGPYLTKTRADGGASETRSLESEDAIFTVDETHAQALFAQPKYGRGRGAAKPPLRT
LGPDPESKREVSIKEGFYGAYITDGETNRSLPKQYDPKTISAEDAFRLLAEKRAAGPSKR
RGRKGKASAKSTGKGTAKGRKSAPKKSATETARDRRRKQVRELAEQGWANTRIAKEIGSS
AATVKADVEYLEANEGFKRPPVVPAK
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccggcagcaagctcgtcatagtggagtctcccgccaaggcgaagaagatcggc
gggtatctcggggacggctacaccgttctggcgtcggtgggccatattcgcgacctcgca
cagccaagccaggtgccggcggacgagaaggcgaagttcggcaagttcggcgtggatgtg
aacgacgggttcaagccgtactatatagtcggcccggagaagaagaagaccgtctccgaa
ctgcgttccgcgctgcgcaatgccagcgagctctacctcgccaccgacgaggatcgcgaa
ggcgaggcgatcgcatggcatctcgtgcagacgctcaagccgaaggttccggtcaagcgc
atggtgttccacgagatcacgccggaggcgatccgcgcgtcgctcgaacacacgcgcgaa
gtggacaacaacatggtcgacgcacaggagacccgccgcgtgctcgaccgcctgtacggc
tatgagctgtcgccggtgctgtggcgcaaggtggggccgggcctgtccgccggccgtgtg
cagtcggtggccacgcgcctcattgtggagcgcgaacgcgagcgtatggcgttcgtgcgc
gcgccgtactgggatgtcgtcgccacgctgtgcgccccggacgcgctcggcgagccgacc
gatttcgaatcgcgcatgattgcgctcaatggcactcgtctggccacgtccaaggatttc
aagtcggacggcacgctcaccgacgccgcgcgcacggatggcgtggtgcagctgggcgaa
tcgcaggccggtgaccttgccgacgcgctcgccgacgcccgcttccgcgtgatctcggtg
gagaagaagccgtatcgcaggcgcccgcagccgccgttcaccacgtcgaccatgcagcag
gccgccggcaacagactcggcatgagctcacggcagacgatgcgcgcggcccagagtctg
tacgagaacgggtacatcacctatatgcgcaccgactcggtgacgctgtcgcatgaggcg
atcgaagcggcgcgcgagagcgtgtcgaagaacttcggctcacagtacctttccgaaaag
cccaagcagtatgcgacgaagaccgcgggcgcgcaggaggcgcacgagtgcattcgcccc
gccggctcgcacttccgcgatccctcgcagctcgccacgttgccgcccgatcagctcaag
ctgtacacgctgatctggcagcgcacgctcgcctcgcagatggccgatgccaccggttcc
accgccaccgcgcgctttgcggcatctgcgggcggactcggcgaggcgacgttccagtcg
tcgggcacggtgatcgaattccccggcttcatgcgcgtgaccggcgagcgcggcggctcg
ggcaagaagggcgaggagagcgcgtcgctgccgccgctcgccgagagcgccgaactgccg
gcgaagagcgtgcttgcagacggccatgagacgcagccgccggcacgctacaccgaagcg
tcgcttgtgaagaccttggaggccaaggagatcggccgtccgtcgacgtacgcgaacatc
atctcgacgatcatcgaccgcgggtatgtgtacgagcgcgggcgtgcgctgatccccagc
tggctcgccttcgccgtgaccaggctgctcgagacgaagttccccaagtacgtggactac
cagttcaccgcagatatggagaacggtctcgaccagatcgcgcacggcaatgagaccggt
cgcgaatggctcacccagttctatttcggttcgggcgcggattctgcccgttcggccgac
gaggcacatgagggcctgcaacgtcaggtcgcgcagctcggcgagatcgacgcccgtgag
atcaacacgattccgatcggcgacggcatccatgtgcgcgtggggcgctatggcccatat
ttggaagacacgaaggatctggacgccgaaggcaatccgaagcgcgcctcgattcccgac
accatcgcccccgacgagctcacggtgggcgaggcacgcaagctcatcgccagcaatgcg
ggcggtccgcgtgtgctgggcaccgatccggccaccggaggcaccgttgaggtgcgcaac
ggcagattcggtccgtatgtggcgttggtggcgccggaatctgcacacgaaagcgccccg
accggcaagaagaaggccgcggagccgaagccgaagatggcgtcgctgttcaagagcatg
aagccggagacggtcacgctcgacgacgcgctgcgtctgctgagcctgccgcgcaccgtg
tgcacgtatgacgaggtggatgcgaagaccggtgagacggtctcggtcacgatcagcgcg
agcaacggccgctacggcccgtacctgacgaagacgcgcgcggacggcggcgcttcggaa
acgcgttcgctcgagtctgaagatgcgatcttcaccgttgacgagacccatgcgcaggca
ttgttcgcgcagccgaagtacggtcgtgggcgcggtgccgcgaagccgccgctgcgcacg
ctcgggcccgacccggagtcgaagcgcgaggtgagcatcaaggaaggattctacggcgcg
tacatcaccgacggcgagacgaaccgctcgctgcccaagcagtacgatccgaagaccatc
tccgccgaggacgcgttccgcctgctcgccgagaagcgcgccgccgggccgagcaagagg
cgtggccgcaagggcaaggccagcgcgaaatcgacggggaagggcacggcgaagggcagg
aagtccgcgccgaagaagtccgccactgagacagcccgcgacaggcgccgcaagcaggtg
cgcgagctggccgagcagggctgggcgaacacgcgcatcgcgaaggagatcggctcctcg
gccgccacggtgaaggccgacgtggagtatttggaggcgaacgaaggcttcaagcggccg
cccgtcgtcccagccaagtag
DBGET
integrated database retrieval system
