Bifidobacterium animalis subsp. lactis BB-12: BIF_02176
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Entry
BIF_02176 CDS
T01840
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbb
Bifidobacterium animalis subsp. lactis BB-12
Pathway
bbb03420
Nucleotide excision repair
bbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BIF_02176
03430 Mismatch repair
BIF_02176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbb03400
]
BIF_02176
Enzymes [BR:
bbb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BIF_02176
DNA repair and recombination proteins [BR:
bbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BIF_02176
MMR (mismatch excision repair)
Other MMR factors
BIF_02176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
DUF4926
Motif
Other DBs
NCBI-ProteinID:
ADC84642
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All DBs
Position
complement(1456361..1457950)
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AA seq
529 aa
AA seq
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MSETAQPNAGTDNGAPTIAHSEVEMGTTSPERILATLDDAQRSAALAVDGPVRIIAVAGA
GKTRTITRRIAYACASGVWDPTRVLAVTFSVKAANEMRERLDALQVPRGVRASTFHSAAL
RQMREVWPDICEGPFPDVTEDKSALVAQALYRFNGIRPKEQPKQSVYEVGAEIDWCKVSL
ITAKNYARVCAATHRTPPAGLEPGQFATVYEQYEAEKNSRFEIDFNDILLLACHVLDAFP
DVAKRIRRQIGWLTVDEYQDVSPLQHLLMTRWLGSNRNICVVGDPAQTIYSFAGATSYYL
EHFGKEFAPLTADIALNRDYRSVSPIVGYANRVLGGSAQRQDYIRLESGRGTGSRVMSRI
YETDAAEAQAVARQISRILAQGGNASDCAVLTRVGGQQTLVAQALKQANIPYRLRRNMNW
QSSALAGTARQETAETSNAGVEQLGVEKGRVTISTIHAAKGLEYKHVFVIGLSEGLLPYK
PQSDDGDVEEERRVLYVALTRAEDTLHLSFAKRSDSQTTYVRRLSRFLQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacagcacagccgaatgcgggcacagacaacggggccccgaccatcgcacac
agcgaagtcgaaatgggcacgacctcacctgagcgcatactcgccacgctcgatgacgcc
caacgctcggccgcgctggcagtggacggcccggtgcgcatcatcgcggtcgccggcgcc
ggcaagacgcgaacaatcacgcggcgtatcgcgtacgcatgcgcgagcggggtatgggat
cccacccgggtgctcgcagtgacgttctcggtgaaggcggccaatgagatgcgcgagcgt
ctggacgcattgcaggtgccgcgtggagtgcgcgcatccacgttccattcggccgcattg
cgtcagatgcgcgaggtgtggcccgacatctgcgaagggcctttccccgacgtcaccgaa
gacaaaagcgcgcttgtggcccaggcactgtatcgcttcaacggaatcaggccgaaggag
cagccgaaacagagcgtgtacgaggtgggtgccgaaatcgattggtgcaaggtctcgctg
atcaccgcgaagaactatgcgcgcgtgtgcgctgcgacgcaccgcacaccgccggccggt
ctcgaaccgggccagttcgccaccgtctacgagcagtacgaggcggagaagaacagtcgg
ttcgagatcgatttcaacgacatcctgctgttggcatgccacgtgctcgacgccttcccc
gacgtcgccaagcgaatccgcaggcagatcggttggctcaccgtcgacgaataccaagac
gtctcgccgttgcaacacctgctcatgacgcgctggctgggaagcaaccgcaacatctgc
gtagtcggcgatcctgcgcagaccatctattcattcgcgggcgccaccagctactatctc
gagcatttcggcaaggagttcgctccgctcaccgctgatatcgcgttgaaccgcgactac
cgatccgtttcacccattgtcggctacgcgaaccgggtgcttggcggctccgcgcaacga
caggactacatcaggctcgaatctgggcgcggaaccggctcgcgcgtgatgagccgcatc
tacgagaccgacgcagccgaggcccaggcggtcgcacggcagatctcgcgcattctcgcg
cagggaggcaacgcgagcgactgcgcggtgctcacgcgcgtgggcggccagcagaccctt
gtcgcgcaggcgttgaaacaggcgaacataccctaccggctgcgcaggaacatgaactgg
cagtcgtccgcgctcgccggcacggcacggcaggagaccgcggagacatcgaatgccggg
gtggagcagcttggcgtggagaaggggcgcgtgacaatctcgacgatccatgcggccaag
ggcctcgaatacaagcatgtgttcgtgataggcctgtcggaggggctattgccctacaag
ccgcaaagcgatgacggcgatgtggaggaggaacggcgtgtgctgtacgtggcgctgacc
cgtgcggaggacaccctccacctgtcgttcgccaaacgatcggattcgcagaccacctat
gtgcgacggctgagccgattcctgcagtaa
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