Bifidobacterium animalis subsp. lactis BLC1: BLC1_1179
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Entry
BLC1_1179 CDS
T01841
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbc
Bifidobacterium animalis subsp. lactis BLC1
Brite
KEGG Orthology (KO) [BR:
bbc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbc03019
]
BLC1_1179
Enzymes [BR:
bbc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BLC1_1179
Messenger RNA biogenesis [BR:
bbc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BLC1_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_30
HA2_C
ResIII
AAA_11
NACHT
AAA_16
Zeta_toxin
AAA_23
SRP54
TsaE
Motif
Other DBs
NCBI-ProteinID:
AEN76951
LinkDB
All DBs
Position
1402151..1406197
Genome browser
AA seq
1348 aa
AA seq
DB search
MKFEYPDQLPVSAAREAIANAVRSSQVVIISGQTGSGKTTQLPKILLELGRGSHGKQIVH
TQPRRLAARTVAERLADEMGVRLGDEIGYQVRFTDESSPKTRLRVVTDGILLAQIQRDPK
LTRYDTIIIDEAHERSLNIDFLLGYLTALLPLRRDLKLIITSATIDSAKFQKHFEDALRT
EVPVIEVSGRTYPVTICYEPLGGTPALMRHVPGFADGTAGDDITNPDAEAMDMPTAVARA
CTELAILSTHDQGPRDILVFASGERDIRDFEQALRHHFGPRAADMRRPDAIEIVPLFARL
SAKEQHRVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGTARISRYSKQAKVQRLPIEP
ISQASADQRSGRCGRIADGIAIRLYSSEDYESRPRFTEPEILRTSLGAVVLHMLSVGVAR
TAEDITDFGFIDPPDIKAVSDGINELTELRAISRKRGVMQLTHTGRQLARIPIDVRLGRM
VIEAARSTTPNTLAAVLVVVAFLSLQDPRERPEEKREEADCIHNRYADETSDFLTALNIW
DRAYGADGEMSSHALRRLCKTEYLHFLRMRQWRDLVSQLRELCRELKFNVGEPIPVSRPP
REIRELPISQQAAHSLACSWDSQGIHTSMLAGLLSMMGMQVVHEPKASDFTGLKGAARAR
AMKRAQKMAKNDYLGARGTHFAIFPASALSKSTPSWVMSTELVQTSRLWARYCAAIDPAW
AEPLAGNLTRTTYANPHWSASRGSAVAESNVLLYGLPIVQGRTVQWGRINPLEARDFLIR
QGLVEGEIQQRFAHDEFIDANRSVIEEAQEESNRTRQVAQTVSDEDLYDFYNEVIPNTVT
CVADLAKWWKGEFEAHPHLLDFDPSKVERLLDQESVSMEDFPDHWVAVGSDERVIELRLS
YVYDTHDPADGVTVHIPLGVLSRISAPQFSWNVPGLRHELIVAMIKALPKALRVQFVPAP
DTATKIEDWIDSHFQTDPGSGTLDSPAQVDGGVWPDFAHVFTQAAIEVVGAQIHPEVLDG
LADKLPPYLRMNFVIEQPKPRPKRAHRRRSYDDGVVVLGTGKSLVELQRQFAEQAQESAR
KIVHRQAQKAAEQGQVVAEADLLRKAGATTEAREEMLWRGALDRLRLPAERISSRWLGAE
ALMLASAPYSTTKALADNLQLQTVKRLLPDIAKLSSDEALSEAVDGVKEVFEDAVYEVAK
DAIEVLRAYAQVDKAVSGKADLPMLSVLQSVREHIATLVHPGFIGATPPDSFRRLPVYLQ
ADMIRLSKAKTDKNRDVRWAWQADEAKQIVDKALEKARKEPAGAKHDELMAKALKARWML
EEFYVSLWAQELGTPYPVSVQRIQKALR
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaataccccgatcagctgcctgtctcggccgcacgcgaagccatcgccaac
gcggtgcgttccagtcaggtggtgatcatctccgggcaaaccggttccggcaagaccacg
cagctgccgaagatcctgctcgaactcggtcgcggctcgcatggcaagcagattgtgcac
acgcagccacgccgtctcgccgcgcgcaccgtggccgaacgcctcgccgacgagatgggc
gtgcgcctgggcgacgaaattggctaccaggtgcggttcaccgacgaaagctcgccgaag
acacgcctgcgcgtggtcaccgacggcattctgctcgcgcagatccaacgcgatccgaaa
ctgacacgctatgacacgatcatcatcgacgaggcgcacgaacgcagtctcaacatagac
ttcctgctcggctatctcaccgccctgctgccgttgcgtcgcgacctgaagctcatcatc
acctccgcgacaatcgattcggcgaagttccagaagcatttcgaagacgcactgcgcacc
gaggtaccggtaatcgaggtctccggccgcacgtacccggtcacgatctgctatgagccg
ctgggaggcactcccgcgctgatgaggcatgttcccgggtttgcggacggaacggccggc
gacgacatcacgaacccggacgccgaggcaatggacatgcccaccgcggtcgctcgcgca
tgcaccgaattggcgattctctccacgcatgaccaaggaccacgtgacattctcgtgttc
gcctccggcgagcgcgacatccgcgacttcgagcaggcgctccgccatcatttcggcccg
cgtgccgccgacatgcgcaggccggacgccatcgagatcgtgccgttgttcgcacgtctg
agcgccaaggaacagcatcgcgtgttcgaaccgcatacgcaccagcgcatcgtcatcgcc
acgaacgtggccgagacatcgctcacggtgccgggcatacgctatgtggtggatccgggt
accgcgcgtatctcgcgctattcgaagcaggcgaaagtgcagcggctgcccatcgagccg
atctcgcaggcgagtgccgaccagcgttcgggtcgctgcggccgtatcgccgacggcatt
gcgatccgcctgtattcgagtgaggattacgagtcacgcccgcgtttcaccgagccggag
attctacgcacgtcgctcggcgcggtcgtgctgcacatgctctcggtgggcgtggcgagg
acggcggaggacatcaccgatttcggattcatcgacccgcctgacatcaaggcggtctcc
gacggcatcaacgaactcaccgaattgcgtgcgatttctcgcaaacgcggcgtcatgcaa
ctgacgcacaccgggcgccagcttgcgcgcataccgattgacgtgcgtctgggccgcatg
gtgatcgaggccgcccgctccaccacgccgaacaccttggccgcagtgctcgtcgtcgtg
gcgttcctgagcctgcaggatccgcgtgaacgccccgaggagaagcgcgaggaggcggat
tgcatccacaaccgctacgccgacgagaccagtgattttctcaccgcactgaacatatgg
gaccgcgcatatggggcggatggcgagatgagcagccatgcactgcgcaggctgtgcaag
actgaatacctgcatttcctgcgtatgcgccagtggagggatctcgtctcgcagctgcgc
gaactgtgccgcgaactcaagttcaatgtgggcgaaccgattccggtgtcgcgaccgccg
cgtgagatccgggaactgccgatcagccagcaggctgcgcattcgctcgcctgttcatgg
gacagccaaggcattcacacctccatgttggccggtctcctctcgatgatgggcatgcag
gtcgtgcatgagccgaaggcatctgatttcaccggtctcaagggtgccgcccgagcgcgg
gcgatgaaacgtgcacagaagatggcgaagaacgattacttgggtgcgcgaggcacgcat
ttcgcgattttcccggcgtcggcactctcgaaatccacgccgagctgggtgatgagcacc
gaactcgtgcagacgagccggttgtgggcgcgctactgcgctgcaatcgaccctgcgtgg
gcggagccgctcgccggcaatctgacccgcaccacgtatgcgaacccgcactggtccgcc
tcacgtggctccgcagtggcggaatcgaatgtgctgctgtatgggctgcccatcgtgcag
gggcgcaccgtgcagtgggggcgcatcaacccgctcgaggctcgtgatttcctgattcgt
cagggacttgtggaaggtgagattcagcagcggttcgcgcacgacgagttcatcgacgcc
aaccggtcggttatcgaggaggcccaggaggagtcgaatcgcacacgtcaggtggcgcag
acggtgagcgacgaggatctgtacgatttctacaacgaggtgattccgaacacggtgacc
tgcgtggctgacctggcgaaatggtggaagggcgagtttgaggctcacccgcatctgctt
gatttcgatccgtccaaggtggagcggctcctcgatcaggaatcggtgagcatggaggac
ttccccgaccactgggtcgccgtcggttccgacgagcgtgtgattgagctgcggctgagc
tacgtttacgacacgcacgatcctgcggacggcgtcaccgtgcacattccgctcggcgtg
ctctcacgcatctcggcaccgcagttcagctggaatgtgcccgggctgcgtcatgagctc
attgtggcgatgatcaaggcattgccgaaggcgctgcgcgtgcagttcgtgccggcgcca
gacaccgcgacgaagatcgaggactggatcgactcccatttccaaaccgacccgggttcc
ggcacactggattcccctgcacaggttgacgggggcgtgtggccggatttcgcgcacgtg
ttcacacaggccgccatcgaggtggtcggggcgcagattcacccggaggtgctcgatggc
ctcgccgacaagctgccgccatacctgcgcatgaatttcgtgatcgagcagccgaagccc
cggccgaagcgtgcccaccgccgccgttcgtacgacgatggcgtggtggtgctcggcaca
ggcaagtcgctggtcgagctacagcgccagtttgccgaacaggcgcaggaatccgcacgc
aaaatcgtgcaccggcaggcccagaaggccgccgagcagggtcaggtggtggccgaggcg
gatctgctgcgcaaagccggtgccaccacggaggcgcgcgaggagatgctctggcgaggg
gcgctcgatcggctgcgcctgcctgccgaacgcatctcgtcacgctggctcggtgccgag
gccctcatgctcgcatcggctccgtattcgaccacgaaggcgctcgccgacaacctgcag
ttgcagacggtgaagcgattgctgccagacattgcgaaactgagctccgacgaggcgttg
agtgaggccgtggatggcgtcaaagaagtgttcgaggacgccgtgtatgaggtggccaag
gacgcgatcgaggtgctgcgggcctatgcgcaggtagacaaggcggtcagcggcaaggcc
gacctgcccatgctctcggtgctgcagtcggtgcgcgaacatatcgccacactcgtgcat
cccggtttcatcggcgccacgccgcccgattcattccgcagactgccggtctacctgcag
gccgacatgatcagactctccaaggcgaaaaccgacaagaaccgcgatgtgcgctgggcg
tggcaggccgacgaagccaaacaaatcgtcgacaaagcgctcgaaaaggcacgcaaggag
ccggccggggccaagcacgacgagctcatggccaaggcgctcaaggcacgctggatgctc
gaggagttctacgtgtcgctctgggcgcaagagctcggcactccttacccggtaagtgtg
cagcgcatccagaaggcactgcgttag
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