Belliella baltica: Belba_0987
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Entry
Belba_0987 CDS
T02134
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbd
Belliella baltica
Pathway
bbd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Belba_0987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbd03400
]
Belba_0987
Enzymes [BR:
bbd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Belba_0987
DNA repair and recombination proteins [BR:
bbd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Belba_0987
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFL83629
UniProt:
I3Z311
LinkDB
All DBs
Position
complement(1036544..1039903)
Genome browser
AA seq
1119 aa
AA seq
DB search
MDKKSFLSLYEKDPFVLTFSEQLKYRKNRNFQLKGVSGSLDMVLFTSVFNSIGGFHLIVA
HDKEEAAYLNSDLQELLGKKDTLLFPSSYKRPYQFDEVENANILMRAEILNKILAKENKN
EVVITYAEALYEKVINKRSLKENTFIASVGEKVDMEFIAEILSTYDFEKSDFVYEPGQFS
IRGGILDVYSYANDLPYRIELFGREIESIRTFDPETQLSVDQIDSISIIPNVQTRLLQEV
RQSFLEFLPNDTVLWLKDQQFTFDVLDQNFEKATKHFDQIVDNTNNDKLLPKPSDLFDNS
STFETLSNSFVKVEFGHKFYGQDSQVIQFDTQPQPSFNKNFDLLVENLVSNEKNSWLNII
CSENDKQINRLENILHELDPTLKTQSLLIGLREGFVDKTLRVACYTDHQIFERFHRYKTK
ARSSKSKALTLKEIKSLHPGDYIVHIDYGVGRFAGLEKVNVNGKLQEAVRLVFRDDDLLY
VNIHSLHKISKYSGQEGTAPTMSKLGSPEWDNKKRKVKGKVKDIAKDLIALYAKRRNAPG
FQFSPDSVLQVELESSFVFEDTPDQASATADVKVDMEKPYPMDRLVCGDVGFGKTEVAIR
AAFKAVNDRKQVAILVPTTILAMQHFHTFQERLADFPVKVDYINRFRTAKEIKEITKQVT
SGEIDILVGTHRIVNKDIKFKNLGLLVIDEEQKFGVKVKDQLKEMKLNVDVLTLTATPIP
RTLHFSLMGARDLSVIATPPPNRQPVTTEIHTFQEEVIRDAVAYELRRGGQVFFVHNRVG
EIDTIANIIMKLVPDARVAGAHGQMDGKALEKIMVKFIEGEFDVLVSTNIIESGLDIPNA
NTIIINRAHMFGLSDLHQMRGRVGRSNKKAFCYLLTTPTTGLTTEARKRLQTLEEFSDLG
DGFKVAMRDLDIRGAGNLLGAEQSGFITDLGFEMYHKILDEAVQELKENEFAALFEDDLK
EKVEILVQDCVIETDMELLIPETYVSNISERLNLYSKLDNIKKEEELLSYIKTIQDRFGP
IPEVVEDLFETVRLRWLAEQLGFEKLVLKNDVMKCYFVPSTKESYFKSEVFGNILKYVGT
QSRHCKMKEHKSRLILTISGVKDISRAKKWLNDMKIQKN
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
ttggacaaaaaatcattcttatccctctacgaaaaagatccttttgtactgactttttcc
gagcaactaaagtaccgaaaaaacagaaatttccagctaaagggagtttcaggaagtttg
gatatggtcttgtttacgtcggttttcaacagtattggtgggtttcatttgattgtggcc
catgataaggaagaagctgcgtatttaaattctgatcttcaagaattgttaggaaagaaa
gatactttactttttccttcaagttataaaagaccttatcagtttgatgaagtagaaaat
gccaatattctgatgcgggcagaaattttgaataagattctagccaaagagaataaaaat
gaagtggtgattacctacgctgaggcgctttatgaaaaagtgatcaataagagatctttg
aaggaaaatacttttatagcctccgttggagaaaaagtcgatatggagtttatcgctgag
attctttccacctatgattttgaaaaatctgattttgtctacgagccgggacagttttct
attcgaggagggattttagatgtgtattcttatgccaatgatcttccttataggattgag
ctttttggtagagaaatagaaagtatcagaacatttgacccagagacccagctatctgta
gatcaaattgattctatcagtatcatccctaatgtgcaaacccgattgcttcaagaagtg
agacaatcatttttggagtttttgcctaatgacactgtactttggttgaaagatcaacaa
tttacttttgatgtattggatcaaaattttgaaaaagcgaccaagcattttgaccaaatt
gtggacaacaccaataatgataaactgcttcccaagccaagcgacttgtttgacaattca
agtacttttgagactttgagcaattcttttgtcaaagtagagtttggtcataagttttat
ggtcaagatagtcaagtcattcaatttgatactcagccgcagccttctttcaataagaac
tttgatctcttggttgaaaacctggtaagcaatgaaaaaaatagctggctcaatatcatc
tgttctgagaatgacaaacaaatcaatagactagaaaatatcttacatgaattggatcca
acgcttaagacccagtcattacttattggtcttagagaagggtttgttgacaaaaccttg
cgtgtggcttgctacaccgatcatcagatttttgagcgatttcacagatacaaaaccaaa
gctagatccagtaaatcaaaagcactaacacttaaggaaatcaaatctcttcatccggga
gattatatagtgcatattgactacggcgttggaaggtttgcaggattagaaaaagttaat
gtgaatggaaagcttcaagaggcagttcgattggtttttagagatgatgatttgctttat
gtgaatattcattcactccataaaatatcgaaatattctggtcaagaaggcactgcaccc
acgatgtccaaacttggttcaccagagtgggataataaaaagcggaaggtcaaagggaag
gtcaaagacatcgccaaagacctgattgctttgtatgctaagcgaagaaatgcgcctgga
ttccagttttcgcctgattcggtattgcaggtggaattggaaagttcctttgtctttgag
gatactccggaccaagcttctgctacggcagatgtcaaagtagatatggagaagccttat
ccgatggacaggttagtgtgtggtgatgtgggttttggaaagactgaagttgcaattcgt
gctgcatttaaggcggtaaatgatagaaagcaagtggctattttagtcccaacgaccatt
ttggctatgcagcattttcatacatttcaggagaggttggcagattttccagtaaaagtg
gactatatcaacaggtttagaacagcgaaggaaatcaaagaaatcaccaaacaggtcacc
tctggagaaattgacattttggtgggaacacatagaattgtcaataaagatatcaagttc
aagaatttggggcttttggtcattgatgaagaacaaaaatttggagtaaaagtcaaagat
cagctcaaagaaatgaagctgaatgtagatgtattgaccttgacagccacgcctattcca
agaacgctgcacttttcacttatgggagcaagagacctgtctgtaatagctacaccacca
cctaataggcagcctgtcactaccgaaattcatacctttcaagaagaggttatccgtgat
gctgttgcttatgagttacgacgtggaggtcaggttttctttgttcacaaccgtgttgga
gaaattgatactattgcaaatattatcatgaagctggttccagatgcgagagttgcaggg
gcacatggacagatggatggaaaggcattggaaaaaatcatggtgaagtttatcgaaggc
gaatttgatgttttggtgtctaccaacatcattgaatctggattagatataccaaatgca
aataccattattatcaaccgagctcacatgtttggtttgagtgatttacatcaaatgaga
ggaagagtgggtcgaagtaacaaaaaagctttctgttatcttttgacaacgccaacgact
gggctgaccacagaagcaagaaagcgtttgcaaactttagaggagttttctgacttgggt
gatggtttcaaagtagcgatgcgagacttagacattcgaggtgcaggaaatctactgggg
gctgagcaaagtgggtttatcactgatttaggatttgaaatgtaccataagatcttagat
gaggcagttcaggaattgaaggaaaatgaattcgcagccttgtttgaagatgatttgaaa
gaaaaagtagagatcttagttcaggattgtgtcattgagacagatatggagcttttgatt
cctgaaacctatgtaagtaatatttcagagcgattgaatttgtattcaaagctagataat
ataaagaaggaagaagagttattatcctatatcaaaactattcaagacagatttggtcca
ataccagaggttgttgaggatttatttgaaactgtccggctaagatggcttgctgagcag
ttgggatttgaaaaattagttttgaaaaatgatgtgatgaaatgttattttgtcccatct
accaaagaaagttacttcaagtcggaagtctttgggaatattttgaaatatgtaggaaca
cagtctaggcactgtaaaatgaaagagcataagagccgtttgatactcactatcagtgga
gtaaaagacatcagtcgagctaaaaaatggttaaatgatatgaaaatccaaaaaaattaa
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