Brevibacillus brevis: BBR47_01030
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Entry
BBR47_01030 CDS
T00879
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbe
Brevibacillus brevis
Pathway
bbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBR47_01030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbe03400
]
BBR47_01030 (mfd)
Enzymes [BR:
bbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBR47_01030 (mfd)
DNA repair and recombination proteins [BR:
bbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBR47_01030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
PTH2
Motif
Other DBs
NCBI-ProteinID:
BAH41080
UniProt:
C0ZHD9
LinkDB
All DBs
Position
105920..109468
Genome browser
AA seq
1182 aa
AA seq
DB search
MQVIINPMKQDTNVGTIVAGLEKGLHEQLVSGLAGSARQVLMASLQQMADRPVCVVTHNM
YQAQKVYEDLIELVPSDQVLLYPGNELIGSELAIASPEMLAQRIHVFNRLAQGFTGFLVA
PFAGLRRLVVPPQVWKEAQIQLSVGNELDIESFLLRCIELGYERVDMVERKGEMSIRGGI
IDLYPIDSEWPVRIELFDVEIDSIRTFDMLSQRSLESVQTYILGPAKEMIASTPLLQESA
VRLEQKLGETLANLKDGAAKEKVMERIGSDAERMKQGQRFAQLYSYISVIYPTGDTLLSY
MPSDTLLLVDEPSRVLDTAAQLQKEEGEWLTGRIIQGEYMSNLSLSRTYDEIVSTKKRQI
VYLSLFLRQSPKTQPQNIVNLTCRTMQNFHGQMNVLKTELARWKKSQDQIVFVAADLERA
KRLERVLHDYEMEADVLTEAVETVPPGRPTIILGNLQTGFELPLNKLVVITEGEVFTAKQ
RKARKVQQTMNNAERIKNYLELKPGDFVVHVNHGIGKYLGIETKEILGIHKDYLHIQYAA
GDSLFVPIDQIDHVQKYVASEEAQPKIYSLGGSEWKRVKNKVQSSVKDIAEDLIKLYAAR
ESAVGHTFSPDTTEQREFEAMFPYQETQDQLRAISEVKADMERKRPMDRLVCGDVGYGKT
EVAIRAAFKAVMDGKQVAVLVPTTILAQQHYETFRERFAEYPIRVEVLSRFRSRKEQNAT
LKGLKEGTVDVVIGTHRLLSKDLTFRELGLLIVDEEQRFGVSHKEKLKQIKTNVDVMTLT
ATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVMDYSPALVREAIEREMARDGQVFFL
YNQVQGIEQMAEQISMLVPDARIAVAHGQMNESELEGVILDFLEGNFDVLVSTTIIETGV
DIPNVNTLIIYNADKMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQAIKE
FTELGSGFKIAMRDLSIRGAGNLLGAEQHGFINTVGFDLYSQMLKEAIDELKGEVKHEIV
TPVEINLQLDAYIPSMYITDSRQKIEMYKKFVAVSTLEDVDDLAEELLDRFGPVPKPVDN
LLTISRLRVYALKHHITEISQKNPDEIKLLLHPSQNNNIDGGALFALTSNWSKRVGLSGG
QQITIAVKVKGLKEDEGVQLVEKLLRQFHQVRRDTGTESPVS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtcatcattaacccgatgaaacaggacacgaacgtcgggacaatcgtggctggt
ttggagaaggggctacatgagcagcttgtctctggcttagctggttccgcccggcaagta
ttgatggcgtcattgcaacaaatggcagatcgtccggtctgtgtagtgacgcataacatg
taccaagcacaaaaagtatacgaagatttgatcgagttggttccctctgatcaggtgttg
ctttatcccggtaatgagctgattggctctgagcttgctattgccagccctgaaatgctg
gcgcagcgaattcatgtattcaaccgtctggcccaaggctttacgggttttttggttgcc
ccttttgctggcttgcgtcgcttggtcgttcccccgcaagtatggaaggaagcgcagatt
cagttatccgtcggtaatgagctcgatatcgagtcctttttgctccgatgtattgagctt
ggctatgagcgagtggacatggttgagcgcaagggagaaatgagtattcgcggtggaatt
atcgacttgtatccgattgattcggagtggccagtgcggatcgagctttttgatgtagag
atcgactcgatccgtacgtttgacatgctctcccaacggtcattggaatcggtccagaca
tatattcttggtccagcaaaagaaatgattgcttcgactccgttattgcaggaatcagct
gttcgcttagaacaaaagctgggagaaaccctcgccaatttgaaggatggggctgccaag
gaaaaagtcatggagcgaatcggctctgatgcagagagaatgaagcagggacagcgtttt
gcacagctgtattcgtacatctctgtcatttacccgacgggtgatacattgttgtcctat
atgccttccgataccttgctgctcgttgatgagccttcccgtgtgttggatacggcagcg
caactgcaaaaagaagaaggggaatggctgacgggacgcatcattcagggcgaatatatg
tccaatctcagcctgtcgcgtacgtacgacgagatcgtgtcgacgaaaaagcgccagatc
gtttacctctccctatttttgagacaatcaccgaagacccagccgcaaaacatcgtaaat
ctgacttgtcgtaccatgcaaaacttccatggacagatgaacgtactgaaaacagagctg
gcccgttggaagaagtcccaggatcagatcgtctttgtcgcagctgatttggagcgtgcg
aagcgactggagcgtgtcctgcatgactacgaaatggaagcggatgttttaacagaagca
gtcgagacagtacctccagggcgtcctacgatcattttaggaaacctccagacaggcttt
gagcttccgctaaacaagctggttgttattacggaaggtgaagtgtttaccgcgaaacag
cgcaaggcgcgcaaagttcagcagacgatgaacaatgcggagcgtatcaaaaactatctc
gagctcaagcccggtgatttcgtcgtgcacgtgaatcacgggattggaaaataccttgga
attgaaaccaaggaaattctcggaattcataaagattaccttcatattcaatacgcagca
ggagacagtctgtttgttcctattgatcaaatcgaccatgtgcagaagtacgtggcgagt
gaagaggcacagccgaagatttacagcttgggcggcagtgagtggaaacgcgtcaaaaac
aaagtccagtcgtctgtaaaggatatcgccgaagatttgatcaagctgtacgcagcccgc
gaatctgctgtcggtcacacattctctcccgacacgacagagcagcgtgaatttgaggcg
atgttcccgtatcaagaaacacaagaccagctccgcgcgatttcggaagtgaaagcggac
atggagcgcaaacgtccgatggatcgcctcgtttgtggggacgtaggttacgggaagact
gaggttgcgattcgtgctgccttcaaggctgtcatggacggaaaacaggtagccgttttg
gttccaactacgattctggcgcagcagcattacgagacgttccgtgaacgttttgcggaa
tatccgatccgcgtggaggtattgagtcgattccgttcgcgcaaggagcagaatgccaca
ctaaaaggcctgaaggaaggcacagtcgatgtcgtcatcggtacgcaccgtctactttcc
aaagacctgacattccgtgagctcggtctgttaatcgtagacgaggagcagcgctttggt
gtgagccacaaggaaaagctgaagcagatcaaaacgaatgtggatgttatgactctgacc
gctacgccgattccacgtaccttgcacatgtcgatgctcggtgtgcgtgatttgtcagtc
atcgaaacgccgccagaaaatcgttttccggtgcagacgtatgtgatggattacagccct
gctctcgttcgcgaagcgattgagcgtgagatggctcgtgatgggcaagtgttcttcctc
tacaaccaagtacagggaatcgaacagatggcggagcagatttcgatgctcgttcctgac
gcacgcatcgctgtagcgcatggacagatgaacgaaagcgagctggaaggcgtcattctc
gactttttggaagggaattttgacgtattggtcagcacgacgatcattgagaccggggtg
gacatcccgaacgtcaatacgctgattatttacaatgcagataaaatgggcttgtctcag
ctgtatcagctgcgtggacgtgtaggtcgttccaatcgaattgcgtacgcatactttacg
tatcaacgggacaaggtgctgacagaggtagcggaaaaacgtctgcaagccattaaggaa
tttaccgagctcggctctggtttcaagatcgcgatgcgagacttgtccattcgtggagcg
ggtaatttgctgggcgcggagcagcatggttttattaatacggttggtttcgacttgtat
agccagatgctgaaagaagccattgatgagctgaagggcgaagtcaaacacgaaattgtc
acacctgtggagatcaacctgcaactggatgcctatattccgtcgatgtacattacggac
agccgacagaaaatcgagatgtacaaaaagtttgtcgcggtgtctaccttggaagacgtc
gacgatttggcagaggagctgctagaccgttttggaccagttccgaagccggttgataat
ctgttgaccatttcccgtttgcgtgtgtatgccttgaagcaccatatcaccgaaattagc
cagaagaatccagacgagattaaattgttactgcaccctagtcagaacaacaatatcgat
ggtggagcgctgtttgcgcttaccagtaactggagcaagagggttgggctgtcgggtgga
caacagatcacgattgctgttaaagtaaaggggttaaaagaagatgagggcgtgcagttg
gttgaaaagctgctgcgtcaatttcaccaggtgcgaagagacaccggtacggagagccct
gtgtcttaa
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