Brevibacillus brevis: BBR47_04530
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Entry
BBR47_04530 CDS
T00879
Symbol
ykqC
Name
(GenBank) ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbe
Brevibacillus brevis
Pathway
bbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBR47_04530 (ykqC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbe03019
]
BBR47_04530 (ykqC)
Messenger RNA biogenesis [BR:
bbe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBR47_04530 (ykqC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BAH41430
UniProt:
C0ZJX9
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All DBs
Position
461893..463563
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AA seq
556 aa
AA seq
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MLGGKRLSDVKIFAMGGLGEIGKNMYCVEYEDEIIIIDCGVKFPENEMFGIDLVIPDISY
LKDNQHKIKALLLTHGHEDHIGAIPYILRQIKVPIYGGRLTLGLVKAKLEEHRLQNEVKL
IPISEDTEIPFAKLKATFFRTNHSIPDSLGVVLYTPEGMVIHTGDFKFDMTPVGQTTEYG
KIARIGASGDVLALLSDSTNSERPGFTMSERTVGEGILDVVRKARGRIILATFASNVHRL
QQVVDAAEQCNRKVAVIGRSMEKVFLIGQELGYIQMPEGMLIDIKHIDNYADNQVLIICT
GSQGEPMAALTRIASGSHRTVSIYPEDTVIISASPIPGNTINVSRTIDKLYRAGANVVLS
HAFDIHASGHGSSEELKLMLNFIRPKYFIPIHGEYRMLKTHSKLAQQVGIEESNIFIMDN
GEVLNCNREKAWLSKVQAGIVLIDGSGVGDVGNIVLRDRKHLAEDGLMVVVVSLDMKNFK
ILTGPDIVSRGFVYVRGSESLIQEATQLVRGRLQEALDKKIKEWSELKSQINEVIKPFIY
EKTGRNPMILTILMEV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgttaggaggaaagagattgagcgacgttaagattttcgcgatgggcggcctcggcgag
atcggaaaaaatatgtactgcgtcgagtatgaggacgaaatcatcatcattgactgcggg
gtgaaattccccgagaatgaaatgtttggtattgatctggttatcccggatatttcttat
ctgaaggataaccagcacaagatcaaagcacttttgttaacgcacggacatgaggatcac
attggtgcgattccttatattttacggcaaattaaggtgccgatctacggtggtcgtctg
accctgggcttggtcaaggcgaagctggaagagcaccgtttgcaaaatgaagtgaagctg
attccaatttcggaagatacggaaattccttttgccaagctgaaggcgacattcttccgt
acgaaccacagtattccggattccctgggagttgtgctctatacaccagagggaatggtc
attcacacgggtgacttcaagtttgacatgacaccagtcggacaaacaacggagtacgga
aaaattgcacgcattggtgcgagtggagacgtcttggcgcttttgtccgacagtacgaac
agtgagcgtcctggatttacgatgtcggagagaacggtaggggaagggattctcgatgtg
gtacgcaaagcgcgtggacgcatcatcctggctacctttgcttccaacgtgcatcgcctg
caacaggtggtagacgctgccgagcaatgcaatcgcaaagtggcggttattggccgcagt
atggaaaaggttttcttgattggacaagagctgggttacatccaaatgccagagggcatg
ttgattgatattaagcacatcgacaactacgcggacaaccaagtgcttattatttgcacg
ggtagtcaaggtgagccgatggcagcgttgacccgaattgcttccggatcgcaccgtact
gtttccatttatccagaagatacggttatcatttccgcatccccgattcctgggaacaca
atcaacgtcagtcgcacgatagacaagctgtaccgtgcaggtgccaacgtggtattgagt
catgcgtttgacatccacgcatctggacatggcagcagtgaagaattgaagctcatgctc
aacttcattcgtccgaaatatttcatcccgatccacggggaataccggatgctcaagact
cactccaagctggcccaacaggttgggatcgaggagagcaacatctttattatggacaac
ggcgaagtgctgaattgcaaccgcgaaaaagcgtggctcagcaaagtacaagcagggatt
gtcctcattgatggcagcggtgtaggcgacgtcggcaatatcgttctgcgcgatcgcaag
catttggcagaggatggcttgatggttgtagttgtcagcctggatatgaagaacttcaaa
attttgacgggcccagatatcgtgagccgcgggttcgtatacgtacgcggttcagaatcc
ttgattcaggaagcgacacagctcgttcgtgggcgtctgcaagaagcgttggataagaaa
atcaaggaatggtctgagttgaagtcacagattaatgaagtgatcaagccgttcatttat
gaaaaaacaggccgtaacccaatgattcttaccattttgatggaagtgtag
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