Branchiostoma belcheri (Belcher's lancelet): 109465996
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Entry
109465996 CDS
T07532
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Pathway
bbel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109465996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbel03019
]
109465996
03041 Spliceosome [BR:
bbel03041
]
109465996
Messenger RNA biogenesis [BR:
bbel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
109465996
Spliceosome [BR:
bbel03041
]
Complex B
Other components
Prp19-related factors
109465996
Complex C
109465996
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Suf
TPR_2
TPR_15
TPR_8
TPR_12
ARM_TT21_C
ARM_TT21
RPN7
TPR_1
TPR_7
PPR_2
PPR
DALR_1
TPR_10
Motif
Other DBs
NCBI-GeneID:
109465996
NCBI-ProteinID:
XP_019619062
UniProt:
A0A6P4YK38
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MILINMSVEENKDLLLEETDLAYEEDILRNPFAVKCWLRYVEHKTTTNAPGKAINLVYER
ALRELPGSYKLWYNYLKRRRKQVRGRCITDPAYEDVNNAFERALVFMHKMPRIWLDYCQF
LMDQKKITRTRRTFDRALRALPITQHHRIWPMYLNFIKTYPLHETAVRVYRRYLKLAPEN
TEDYIDYLISIDRLDEAATRLADLVNKEDFVSKRGKSNHQLWHDLCDLISKNPDKIRSLN
VDAIIRGGLHRFTDQLGMLWNSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFAQVFDAY
SEFESTIVNNKLEMDEEGKLSEEDQDDLDLRMARFEDLISERRPLLLNSVLLRQNPHNVN
EWHKRAKLFSEKEKAREVIHTYTEAVQTVDPQKATGKLYTLWVAFAKYYEENSQVDDART
IFEKSTKVPFKHVDDLASVWCEYAEMEIRHENFDAALELMKRATAMPGRKAAYFDETETV
QNRLYKSLKLWSMYADLEESFGTFKSCKAVYDRIIDLRIANPQIIINYGMFLEEHDYFEE
AFKAYERGIALFRWPNVYDIWNMYLTKFIDRYGGKKLERARDLFEQCLEDCPPKYAKNFY
LLYAKLEEEHGLQRHAMAVYDRSTKAVQPDEQYEMFNIYIKRAAEIFGVTYTRQIYEKAI
EMLPEEHAREMCLRFADLEKKLGEIDRARAVYAHCSQMCDPRTTASFWQTWKDFEVRHGN
EDTIREMLRIKRSVQATYNTQVNFMSAQMLAAAGSATGTVADLGPGQMDDMKLLEQRAQQ
LTTEHEKDMPKPKSQLLFVRGGSTQEDLSDAVKANNPDEITLDSEEEGTDSEAEVEEVQL
ERRTVPTEVFGGLAKEDGDQD
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgatacttataaacatgtcagtggaagagaataaggacctgctcctggaggagacagac
cttgcatacgaagaagacatcctgcgcaaccccttcgccgtgaagtgctggctgcgctac
gtcgaacacaaaacgacaaccaacgcaccaggcaaggccatcaacctggtgtatgagcgg
gctctgagggaactgccaggcagctacaaactgtggtacaactacctgaagaggagaagg
aagcaggtgcgaggcaggtgcatcacagaccctgcttatgaagatgtcaacaatgccttt
gagagggccctggtgttcatgcacaagatgccgcgtatctggctggactactgccagttc
ctgatggaccagaagaagattacccgtacccggcgcacgtttgaccgggcactgcgagcc
ctacccatcactcagcaccaccgcatctggcccatgtacctcaacttcatcaagacttac
ccgctgcacgagaccgcggttagagtctacagacggtaccttaagctggccccagagaac
acagaggactacattgactacctgatctccatagacaggcttgacgaggcggccacccgg
ctggctgacctggtcaacaaggaagactttgtgtccaagcggggcaagtcaaatcaccag
ctgtggcacgacctctgtgatctgatttccaagaaccctgacaagatccgctcgctgaac
gtggacgccattatccgcggcgggctccaccgctttactgaccagctgggcatgctctgg
aactctctggctgactactacatccgcagtggccactttgagaaggccagagatgtgtat
gaagaagctatccagactgtggtgacagtgagagactttgctcaggtgtttgacgcctac
agtgagtttgagtccaccattgtcaacaacaaactggagatggacgaggaagggaaactg
tcagaggaagaccaggacgaccttgacctgcggatggcgaggtttgaggacctgatctcg
gagcggcgccccctgctgctgaacagcgtactgctgcgacagaacccgcacaacgtcaac
gagtggcacaaacgggcaaaactcttctccgagaaggaaaaagcaagagaggttatccat
acgtacacagaagcagtacagacggtggacccacagaaggccacaggaaagctgtacaca
ctgtgggtcgccttcgctaagtactacgaggaaaacagccaagttgacgacgccagaaca
atatttgagaagtccaccaaggttccgttcaaacatgtagatgacctggccagtgtctgg
tgtgaatatgctgagatggaaatcagacatgaaaactttgatgcagcccttgagctgatg
aagagggcgaccgccatgccgggtcggaaagcggcgtactttgatgagacggagaccgtg
cagaaccgtctgtacaagtcgctgaagctgtggtccatgtacgccgacctggaggagagc
ttcggaaccttcaagtcctgcaaggccgtgtacgaccgcatcatcgacctcaggatcgcc
aaccctcagatcatcatcaactacggcatgttcctggaggaacacgactactttgaggaa
gctttcaaggcatatgagagaggcattgcactgttcaggtggcctaatgtctatgacatc
tggaacatgtacctgaccaagtttatcgaccggtatggtggaaagaagctggagagagcc
agggatctgtttgaacaatgtctggaagactgtcctcccaaatatgccaaaaacttctac
ctgctgtatgccaaactggaagaggagcacggtctacagcgtcacgccatggcggtgtac
gaccgctccaccaaggccgtacagccggacgaacagtacgagatgttcaacatctacatc
aagcgggcggccgagatctttggcgtgacctacaccagacagatctatgagaaggctata
gagatgctgcctgaggaacatgccagggagatgtgtctaagatttgcagatctggagaag
aagcttggtgagattgaccgggctagagcagtgtacgctcactgttcacagatgtgtgac
ccaaggaccacagcgtccttctggcagacgtggaaggactttgaggtgcgacacgggaac
gaggacacgattcgtgagatgctgcggatcaagcgcagcgtgcaggccacgtacaacacc
caggtcaacttcatgtcggcacagatgctggctgctgcaggcagcgccacagggacagtg
gcggacctcggtcccggccagatggacgacatgaagctgctggaacagcgtgcacaacaa
ctgaccacggaacacgagaaggacatgcccaaacccaagtcacagctgctgtttgtcagg
ggaggtagtacccaggaggacctgagtgatgctgtgaaggccaacaaccctgatgagatc
accctggactcagaggaagaggggacagacagtgaggcagaagtagaagaggtccagttg
gaacggaggactgtccctacagaggtgttcggtgggctggccaaggaagacggcgatcaa
gactaa
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