Branchiostoma belcheri (Belcher's lancelet): 109467237
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Entry
109467237 CDS
T07532
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Pathway
bbel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109467237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbel03019
]
109467237
Enzymes [BR:
bbel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109467237
Messenger RNA biogenesis [BR:
bbel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109467237
mRNA degradation factors
3'-5' decay
Ski complex
109467237
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
DUF3516
Porin_OmpG_1_2
CtIP_N
Motif
Other DBs
NCBI-GeneID:
109467237
NCBI-ProteinID:
XP_019620739
UniProt:
A0A6P4YFE4
LinkDB
All DBs
Position
Unknown
AA seq
1260 aa
AA seq
DB search
MAAAELETLETQKTAPPSAELLDCPFSLLEVGCAGKVHVCPGGDTAKHPLPPLTTLPHGL
PPVLQDLQAQLRGYLQRPQDLPIHDFQKAQKFWPRERDPESLYSAELCPVQTTLQVDRNP
TTGELLGYKEVYLQDTGISAKNSLSLRRPPGPPTEATRGSSTNYPFWPGGMDEPDLGTVL
GMEGGGDVDFENDLLCCPPGFENGVDFKKLKKKEEQLAKIAAPSQHAPNVLNLADILAGD
DEMDWSEEEEEEEEEKEVKEAPTLQRADSLENMLPQDPQAGEVAGPPPPGKAPQGEEQWA
VKVDISTPVADFHRRIPNPAYQWPFELDVFQKQAILHLENHDSVFVAAHTSAGKTVVAEY
AIALSQKHVTRTVYTSPIKALSNQKFRDFKQTFDDVGLLTGDVQLRPEAACLIMTTEILR
SMLYNGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVNIILLSATVPNTMEFA
DWIGRTKKKKIYVISTLKRPVPLEHFLYTGNSKQTSKERFLIVDSARNFLTKGYYAAIDA
KKARASKSSSGYGAKGTRGGDPRQEKNVWLSIIQAIQRDDKLPVVAFTFSKRRCDDNAAM
LTSIDLTTAAEKSEIHLFIQKSLHRLKGPDRDLPQVKHLQELLKRGLAVHHSGILPILKE
VVEMLFSRGLVKFLFATETFAMGVNMPARTVLFDSIRKHDGTQMRDLLPGEYIQMAGRAG
RRGLDTTGTVIILCKGDVPEMADLHKMMLGKPTQLESRFRLTYTMILNLLRVEELRVEDM
MKRSFSEFHTRKDTQVHQREVKDVQEKLKTVKEPDCLMCGVDLENYYMSCKELWELRRQL
QKQILTSPHGLKALSAGRVVTVSNHKHNNALGVVLQVTSGSGNEKLFTTLILCDPSVSES
PTSDPRPDHKVTPVLPNSALFLPDGPCGHVIEPLRPEDITMATTSTLKVNADRIVDDVRK
RQQPRFRNDPPGQSVTVATQELLRLTETHSGGLTPLDPVKDLGVRDVDSVEQLRRKQFLL
ESLHKFSCVHCTKFREHFAELRENIELKDRLNHLCYLLSDNSLALLPEYEQRVQVLKRLR
YLDAAGTVQLKGRVACEISNHELLITELVFENVLTDLQPQEIAALLSCIVFQERRCVEPT
LTETLQKGKDAIIAMATRLAELQRECGVNVQVEDCVEELKFGLTEAVFQWANGMPFSKIT
ELTDVQEGVIVRCIQRLDEACRDVRSAARIIGDPNLYAKMELASEKIKRDIVFAASLYTQ
NT seq
3783 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgctgagttggaaactttggagacgcagaaaacagcccctccctctgcagag
ttactggactgtcccttctccctgctggaggtgggatgtgcagggaaggttcatgtctgc
cccgggggggatacggccaaacacccgctgccaccgctgactactctcccccatggtctg
ccgccggtactgcaggacctacaggcccagttgagagggtacctccagcgtcctcaggac
ctccccatacatgacttccagaaggcacagaagttctggccccgtgaaagagacccagag
tccctgtactcagcagaactctgtcctgtgcagaccacacttcaggtggacaggaacccc
actactggggagcttctcggctacaaggaggtgtatctccaagacacggggatctctgcc
aagaactcgctgtcgctacggcgaccaccaggaccccccacagaggcgacacgggggagt
tccactaactaccccttctggccgggggggatggacgaacctgacctggggactgttctt
gggatggaagggggaggggacgttgactttgagaacgatctcttgtgctgtcctcccggg
tttgagaatggagtcgacttcaaaaaactgaagaagaaagaagagcagttggccaagatt
gccgccccttcccagcatgccccaaacgtgctgaacctggcagacatccttgcaggggat
gatgagatggattggagtgaggaagaggaagaggaggaggaagagaaggaggttaaggag
gcaccaacacttcagagagcagacagtctggagaacatgcttcctcaggatccccaggct
ggtgaggttgccggacccccacccccggggaaggccccccagggtgaggagcagtgggct
gtgaaggtggacatcagcacgcctgtagcagactttcacaggaggattcccaaccctgca
taccagtggccgttcgagctggacgtgttccagaagcaggcgattctgcaccttgagaac
cacgacagcgtgttcgtggcggcgcacacgtctgcgggaaaaaccgtggtggccgagtac
gccatcgctctgtcacagaaacacgtcaccaggacagtctacacctcccctatcaaggcg
ctgtccaatcagaagttccgtgactttaagcagacgtttgatgacgtgggcctgctgacg
ggagacgtgcagctgagaccggaggccgcctgcctcatcatgacgaccgagattctccgc
tccatgctctacaacgggtcggacgtcatccgagatctggagtgggtcatcttcgacgag
gttcactacatcaacgatgcggagagaggtgtagtatgggaggaagtgttgatcatgtta
ccagaacatgtgaacattatcctgctgagtgccacagtcccaaacaccatggagtttgca
gactggatcgggaggacgaagaagaagaagatttacgtgatcagcacgctgaagcgtccg
gtacccctggaacatttcctgtacactgggaacagcaaacagaccagcaaggagaggttt
ctcatcgtggactctgccaggaacttcctcaccaaggggtactatgctgctatagatgct
aagaaggcccgagcctccaagtcttcctccgggtacggagccaaggggacgagaggaggg
gaccccagacaggagaagaatgtgtggctgtcgataatccaggcgatccagcgggacgac
aagcttcccgtcgtggccttcacgttctccaagcgccgctgcgacgacaacgccgccatg
ctgacctcgattgacctcaccacggccgcagagaagagcgagatccacctgtttatacag
aagtctctacacagactgaaagggccggatagggatctgcctcaggtaaaacacctgcag
gagctgctgaagcgaggtctggccgtgcaccacagcgggatcctgcctatcctgaaggaa
gtggtggagatgctcttcagccggggactcgtcaagttcctgtttgccacggagacattt
gccatgggagtgaacatgccggcccggacagttctgttcgactccatcaggaaacacgat
ggcacacagatgcgggacctgttgcccggagagtatatccagatggcaggccgcgccggg
cggcggggactggacacgaccgggaccgtgatcatcctgtgtaagggggacgtgccagag
atggcagatctgcacaagatgatgctgggtaagccgacccagctggagtcccgtttccgg
ctgacatacaccatgatcctgaacctgctgagagtggaggagttgagagttgaggacatg
atgaagagaagcttctctgagttccacaccaggaaagacactcaggtgcaccagagggag
gtcaaggacgtacaggagaaactgaaaacagtgaaggagccggactgcctcatgtgcggg
gtcgacctggaaaactactacatgagctgcaaggaactctgggaactcagaaggcagctg
cagaaacaaatcctgacctctccccacggactgaaggccctgtcggcagggcgggtcgta
accgttagcaaccacaaacacaataacgctctgggagtggtgctgcaggtaacctcgggc
agcggtaacgagaagctcttcaccaccctgatcctctgcgacccctcagtgtcagaaagt
ccgacctctgacccacgacctgaccacaaggtcaccccagtgctgccgaactctgctctc
ttcctgccggacgggccgtgtggtcatgtgatcgagccgctccgtccggaggacatcacc
atggcaacgacctccaccctgaaggtcaacgctgacagaattgtggacgatgtaaggaaa
cgacaacaaccaaggttcaggaacgacccacccggccagtctgtcaccgtggcgacccag
gagctgctgcggctgacggagacccactcgggcgggttgaccccgcttgacccggtgaag
gacctgggtgtgcgggacgtcgactccgtggagcaactccggaggaaacagttcctcctg
gagtcactccacaagttctcctgtgtccactgtaccaagttcagggaacactttgctgag
ttgagagagaacattgagctgaaggacagactgaaccacctgtgctacctgctgtccgac
aacagcctggctctgcttcctgagtatgaacaaagggtacaggtgctgaagcggctgcgt
tacctggatgcggcaggtacggtgcagctgaagggacgggtagcctgtgagatcagtaac
cacgagctgctgattactgagctggtgttcgagaacgtcctgactgacctccagccccag
gagatcgctgctctgctgtcatgtatcgtgtttcaggagagaagatgtgtggagcccact
ctgactgaaacgctgcagaagggcaaggatgcgattatcgccatggcaacgcgtcttgca
gagctgcagcgggagtgcggggtgaacgtgcaggtggaggactgcgtggaggaactcaag
tttggcctgaccgaggccgtgttccagtgggccaacggcatgccattttccaagatcaca
gagctgacagacgtacaggaaggcgtgattgtacgctgtatccagcggttggacgaagcg
tgtcgggacgtccgtagcgccgcccgaatcatcggcgacccgaacctctacgccaagatg
gaactcgcctccgagaagatcaagagggacatcgtatttgccgccagcctctacacccag
tag
DBGET
integrated database retrieval system
