Branchiostoma belcheri (Belcher's lancelet): 109471650
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Entry
109471650 CDS
T07532
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbel03016
]
109471650
Enzymes [BR:
bbel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
109471650
Transfer RNA biogenesis [BR:
bbel03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
109471650
Prokaryotic type
tRNA splicing ligases
109471650
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
109471650
NCBI-ProteinID:
XP_019626550
UniProt:
A0A6P4YBQ8
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MPENRSYNDELNFLDKIDANTWRIKKGFVPNMKVDGFFYVNDLLEKLMFDELRQHSRAAG
FGGFLPAMKQIANVAALPGIVKKSVGLPDVHAGYGFAIGNLAAFDMSNPEAVVSPGGVGF
DINCGVRLLRTNLDERDVQPVKDELAQAMFDHIPVGVGSKGVIPMGARDLEEALEMGVDW
SLREGYAWAEDKEHCEEYGRMLNADQSAVGSKAKKRGLPQLGTLGAGNHYAEIQVVDEIF
DDYASRRMGIDHKGQVVVMIHSGSRGFGHQVATDALVAMEKAMKRDKVLTNDRQLACARI
SSPEGQEYLKGMACAANFAWVNRSSMTFLSRQAFAKVFNTTPDDLDMQLIYDVSHNIAKM
EEHMVDGKQTTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEKG
MEQTFGTTCHGAGRAWSRAKSRRNLDYQEVLDRLAEMGISIRVASPKLVMEEAPESYKNV
TDVVNTCHAVGISKKAIKLRPIAVIKG
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagaacaggagctacaacgatgagctgaactttctggacaagatagatgcaaac
acatggaggatcaagaagggatttgttcccaatatgaaggtggatgggttcttctatgtg
aatgacctgctggagaagctgatgtttgatgagctcagacaacacagcagggcagcaggt
tttggcggattcttgccagccatgaagcagatagccaatgtggcagctctcccagggatt
gtgaagaaatctgtaggattgccagatgtccatgctgggtatgggtttgccattggtaac
cttgctgcgtttgacatgagtaaccccgaggccgtggtgtcgccgggcggggtcggcttc
gacatcaactgtggtgtccggctgctcaggaccaacctggatgagagggacgtccagccg
gtcaaggacgagctggctcaggccatgtttgaccacatccctgtcggggtggggtcaaag
ggggtcatccccatgggagctagagacttggaagaggctttagagatgggtgtggactgg
tccctcagggaaggttatgcctgggcagaagacaaggagcattgtgaagaatatggccgg
atgcttaatgcagaccagagtgctgttgggtctaaagccaagaaacgtggactaccccag
ctgggcaccctgggtgcagggaaccactatgcagagatccaggtggtggatgagatcttt
gatgactacgcctccaggaggatgggcatcgaccacaagggacaggttgttgtgatgatc
cacagtggaagtagaggatttggacatcaagtggcaacagatgctctggttgccatggag
aaggcgatgaagagagacaaggttctgaccaatgacagacagctggcgtgtgcacggatc
agctcccccgagggacaggagtacctgaagggcatggcgtgtgccgctaacttcgcctgg
gtcaacaggtcatccatgaccttcctgtccagacaggcatttgccaaggttttcaacacg
actccagatgacctggacatgcagctcatctacgacgtgtcacacaacatagccaagatg
gaggaacacatggtggatggtaaacagacaacactacttgtacacagaaagggttccaca
agggccttccctccccaccatccacttatacctgtggactatcagttgtcagggcaacca
gtgttgattggcgggaccatgggaacatgtagttatgtattgacagggactgagaagggc
atggaacaaacatttggaacaacctgccatggagctggccgggcatggtctcgagccaag
tcccggcgtaacctagactaccaggaggttctagacagactagcagagatgggcatctcc
atccgtgtggcatcaccaaaactggtcatggaggaggcaccagagtcctacaaaaacgtt
acagacgttgtaaatacatgtcatgcagttggaattagcaagaaagcaatcaagctgaga
ccaatcgctgtcattaagggctga
DBGET
integrated database retrieval system
