Branchiostoma belcheri (Belcher's lancelet): 109472255
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Entry
109472255 CDS
T07532
Name
(RefSeq) symplekin-like isoform X1
KO
K06100
symplekin
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Pathway
bbel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109472255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbel03021
]
109472255
03019 Messenger RNA biogenesis [BR:
bbel03019
]
109472255
Transcription machinery [BR:
bbel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109472255
Messenger RNA biogenesis [BR:
bbel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
109472255
U7-dependent histone pre-mRNA processing factors
109472255
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
INTS1_R4
Cnd1
Motif
Other DBs
NCBI-GeneID:
109472255
NCBI-ProteinID:
XP_019627463
UniProt:
A0A6P4Z0I2
LinkDB
All DBs
Position
Unknown
AA seq
1392 aa
AA seq
DB search
MAADSRLSIASQFFLEDEAGPVEAVSTSDKVVDLLNQASLMPKDVQKINTLKQVQELIVQ
KDPALLDNFLDEMLAFQQDKSADVRKFVVGFIEEACKQDPELLTKVVANLNMLLEDENVN
VVKKVILSTTQIYRVGLSWLSKVRTISEEMESTWDMIVTMKNRILVMLDSENDGVRTHVV
KFLEMMIVVLSARTPDSDIPKKTENDISLDQVPKGHPVIRYNELRDEGTKILDMLLDFTA
SAHISSMNLMASMGSLTAIAKQRPLYMARVVQAFESLHVNLPPTLAKSQVSSVRKNLKLQ
LSTLLKHPSSAEFHSQITTLLLDLGATQQELQRIIPKPSKAEKRERSEGGETSQPSKKPK
VQDEEEDKVEEKPPPKLAPVTTQTANDITAKYLIPLLSNDNVANIVLLSMVTLPDTMPAG
FQSTYTPIQSAGTEEQVGHLARLMAAQMTAAGIGPGVEEMQKQAATSSKKDVEEEGSEHR
GKQSIQTVVGGTTALEKKKPAPLQPQLQQQKSRRIKGFRLADTLKPLSDDENQGMVKAAL
KRILDAERTAIAGGVSQERMKILSSLVVNFGDNLMDIVQDFILEDVRGRVELGFACLYKM
HAETIGKGKDPSALQRYEQCMVRMLSGICNRPDQRDGLFHQVVAGAPYITDGAVNIIRNF
CLDENHVYIGMSTLRDLIISRPSQQLLFLQVLLDLTQSEKLEVRSNSIRFVKLLHTKPKL
QEAIESFALTCLKCLVNKAPPPRLVIGKPAAEAEWTEDLIKLCLHLYLALLPLNHKLIHE
LASVYVAASANIKRVVLRVLESPVKGMGMASPELLLLVENCPRGAETLVTRMLHVLTDKA
PPSPELVRRVRDLYHKRVPDVRFLIPVLNGLEKKEVVAALPKLIKLNPIVVKEVFNRLLG
TQHAGDGNAGQSPLTPGELLVALHNVDTAKCDMKSIIKATGLCFAEKQVYTSEVLAVVMQ
QLMEQNPLPTLLMRTVIQSLSMYPRLLGFVMNILQRLIIKQVWKQPKVWEGFIKCCQRTK
PQSFQVLLQLPPPQLKNVFEKCPDLRAPLLEQIGSFTPHQRAHIPRAVMVVLEAEPSAEE
LKVAQAKAQAQADKAAQEKANQEKAAAEQQKQKEAAAQKAAAEQQAAPKPPEIQKPPPPK
PAATPAAPKPPEAAKSTPPPPAAKATPPPAFQGMAISTVIGGVRTPPTSVSGRTGTPTGT
PNRTGTPTGTPVRPPASTASSAPRQSGMSRPAVAGGRSQAASKPPGAPLVKQAPAAAQQK
PKPAAPSAQPKPTSAGASKPVPSPAPAAAKPAAQSAAKPAAATPAASSADAAKPEAKQPV
QVKQEPAQVKPEPAQVKQEPDQTPASPKPPQAEQMEVDQPVKEEKMETDQEEQKPEEASG
SRRRSARIKAQH
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggacagtcgcctctccattgcctctcagttctttctggaggacgaagcaggt
cctgttgaagctgtatcaacctcggataaggtggttgacctgctgaaccaggcctccctc
atgcccaaggatgtacagaagatcaacacgctgaagcaggttcaggagctgatcgtacag
aaggaccctgcactgctggataacttcctagatgaaatgctggctttccagcaggacaag
tcggccgatgtccgcaagtttgtggtcgggttcatagaggaagcctgtaaacaggaccca
gagctgctgactaaagtcgtggccaatctcaacatgctactggaggatgagaacgtgaat
gtggtgaagaaggtcatcctgtccacaacacagatatacagagttgggctgtcgtggctg
agtaaagtaagaaccatctcagaagagatggagtcgacctgggacatgattgtcaccatg
aagaaccgcatcctcgtcatgttggactccgagaatgacggtgtccgaacccacgtggtg
aagtttctggagatgatgattgtcgtcctgagtgccagaacacctgactcagacattccc
aagaagacagagaatgacatctcccttgaccaggtaccgaagggccaccctgtgatcagg
tataacgagctgcgtgacgagggcactaaaatcctggacatgctgctggacttcactgcc
tctgctcacatctccagtatgaacctgatggccagtatggggtcattgaccgccatcgca
aaacagcgccccctgtatatggccagagtagtgcaggcgtttgaatccctccatgtgaac
ctgcctccaactcttgcaaagtctcaagtcagcagtgtcagaaaaaaccttaagctccaa
ctgtcgaccctgctgaagcatccgtcatctgcagagttccactcccagatcactacacta
ctgctggatctgggggccacgcagcaggagctccagagaatcatccccaagccctccaaa
gctgagaaaagagaaaggtctgagggtggagaaacatcacagccatcgaaaaagcccaaa
gttcaggatgaagaggaggataaggtagaggagaagcctcctcccaagctggctccagtc
accacacagacggccaacgatatcaccgcaaagtacctcatccctctgctcagcaatgac
aacgttgctaacatcgtgctgctgtccatggtgaccctgcctgacaccatgccggcgggg
ttccagtccacctacactcccatccagtctgcaggtacggaggagcaggtgggccacctg
gccaggctcatggccgcgcagatgacggccgcaggcatcgggccgggggtggaggagatg
cagaaacaggctgccaccagttccaagaaagatgttgaggaagaaggatcagaacatcgc
gggaaacagagcatccagactgtcgtgggagggacgactgccctggaaaagaagaaacca
gccccactacaacctcaactacagcaacaaaagagtcgtcgcatcaagggtttccggttg
gcagacaccctgaagccactgtctgatgatgaaaaccagggcatggtgaaagctgcactg
aagcgcatactggatgcagagcgcacagctatcgcaggaggagtctcccaggagaggatg
aagattctgtcttcactggtggtgaactttggggacaacctcatggacattgtacaggac
tttatcctggaggatgtgcgtgggcgagtggagctgggtttcgcctgtctgtacaagatg
cacgcagagacgatcggtaaagggaaggacccgtcggccctgcagcggtacgagcagtgc
atggtcaggatgctgtctgggatctgtaaccggccggaccagagggacgggttgtttcac
caggtagtggctggcgctccctacatcactgacggagccgtgaacatcatccgtaacttc
tgtctggatgagaaccatgtgtacatcggcatgtcaaccctgcgtgacctgatcatcagc
cgcccgtcccagcagctcctgttcctacaggtcctgctcgacctcacacagagcgagaaa
ctagaggtacgctccaacagtatccgctttgtgaagctgcttcacacaaaaccaaagcta
caggaggccattgagtcctttgccctgacctgtctgaagtgtctggtgaacaaggccccg
cccccacgactggtgatcggcaaaccagctgcagaagctgagtggacggaggacctgatc
aaactgtgtctccatctgtacctggccctgctgcctctcaaccataaactcatccacgaa
ctcgcctctgtgtacgtagcagcctcggccaacatcaagcgtgttgtgctgagagttttg
gaaagcccggtaaaaggcatgggcatggcgtccccagagctgctcctgttggtggagaac
tgtcctcgtggagcggagactctggtcaccaggatgttacatgtgctcactgataaggct
cccccctcccctgagttggtgagaagagtgcgtgacttgtaccacaagagggttcctgat
gtccgattcctcattcctgtactcaacggactggaaaagaaagaggtagtggctgcactg
cccaagctgatcaagctcaatcctattgtggtgaaggaagtcttcaacaggctgctggga
acacaacatgccggtgatggtaatgccggccagagtcccctcacccctggggagttactg
gtggcgctacacaacgtcgacacggccaagtgtgacatgaaatctatcatcaaggcgacg
ggcctgtgttttgctgagaagcaggtgtacacgtcggaggtgctggccgtggtgatgcag
cagctgatggagcagaacccgctgcccaccctgctgatgagaacagtcatccagtccctc
agcatgtacccccgactgctgggcttcgtcatgaatatcctgcagaggctcatcatcaag
caggtgtggaagcagccgaaggtctgggagggtttcatcaagtgctgccagcgcaccaag
ccgcagtcgttccaggtgctgctgcagctgccgccgccgcagctgaagaacgtgttcgag
aagtgcccggacctgcgggcgccgctcctggagcagatcggcagcttcacgccgcaccag
cgggcgcacatcccccgcgccgtcatggtcgtgctggaggcagagccgtccgcggaggag
ctgaaggtggcccaggctaaagcacaggcgcaggcagacaaggccgcacaggagaaggca
aaccaggagaaggcagctgcagaacaacagaaacagaaggaagcagcagcccagaaagct
gcagcagaacagcaggcagccccgaaacccccggagatccagaagccgccaccaccaaag
ccagctgcaaccccagcagccccaaaaccaccagaggccgcaaagtccactcctcctcct
cctgctgccaaggccacacctccgccggccttccaggggatggctatctccacggtcatt
gggggggtacggacacctccaaccagtgtgtccggcaggacaggaacccccacagggacc
cccaacagaacaggaacgcccacgggaacccctgtcagaccccccgcctccacagcttcg
tctgctcctagacaatctggcatgagcaggccggcagtggcaggagggagatcccaggct
gcctccaagcctcccggggccccgctggtcaaacaggctccggccgcggcccagcagaaa
cccaaacctgcagcaccatctgcacagcccaaaccaacatcagcaggtgcttcaaaacca
gtcccttcacctgccccagctgcagcaaagccagctgcgcagtcagctgctaaaccagct
gctgccacacctgctgcctcctcggctgatgcagcaaaacctgaggcgaaacagcccgtc
caggtgaagcaagaaccggcccaggtcaagccagagccggcccaggtcaagcaggaacct
gatcaaactccagcttctcccaagcccccccaagcagaacagatggaggtggaccaaccg
gtgaaggaggagaagatggagactgatcaggaggaacagaaaccagaggaagcctcaggg
tcgaggaggagaagtgccagaattaaggcacagcattga
DBGET
integrated database retrieval system
