Branchiostoma belcheri (Belcher's lancelet): 109484488
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Entry
109484488 CDS
T07532
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
bbel
Branchiostoma belcheri (Belcher's lancelet)
Pathway
bbel04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bbel00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109484488
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bbel00536
]
109484488
Glycosaminoglycan binding proteins [BR:
bbel00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109484488
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
109484488
NCBI-ProteinID:
XP_019643324
UniProt:
A0A6P5AAT0
LinkDB
All DBs
Position
Unknown
AA seq
1694 aa
AA seq
DB search
MDIKSVAVRWIYHGRTRSDSTLSALLLAVLISHHVATIAGIEIELPEGSADLIDIFQLRG
LPKGINKAIGFCENRPDGPDVAYRVSKDATLVVPTTELFPNDAEKTFPVDFSVLLTVKPS
LASRSYLFTVIVENNVQFGVQLADVDWVFLYADGEGRPGFEESPRFNHNVADGQWHRIAF
SVQRNKVSMIMDCDIKNEVTMDLDRSPGAEGAIRTDGMTAFGRHFFRENVAYEGLVQDIF
IIPDPLAAYDQCVKYTPDCPKNQTTGTLDGNGNGFDLFDKIDFDADLNRGVTTDFGEGEI
GLFGESNVKGQKGEPAVIEPGMFIPGSRGYPGPPGIPGPRGYPGPSGDPGAPGPRGPRGR
EGLPGADGLPGPPGPGISIPLSMLGSLGMGADCSKGPGGCNEAAMAEQIMAGMIGPPGPS
GPVGIAGRPGPPGMQGGLGPKGDVGEMGQMGPRGPRGPMGPPGKDGKRGRHGKDGGRGPP
GQDGLKGERGFDGLPGLPGQKGNRGGHGSPGPSGPPGDSGDKGDDGERGLPGMPGEPGQR
GLMGPRGPPGVQGPPGMPGNMGPGGMKGATGAPGKPGAPGPQGLIGPPGSPGPQGAVGPP
GLTGPSGKPGLPGLPGVDGLPGHPGKEGVPGPKGATGPPGPQGPVGYPGSRGIKGSQGTR
GPPGQKGDKGEDGFPGFKGDQGPKGDRGIGGEIGPRGQEGPEGPKGRSGAPGDPGPPGSP
GEKGKMGIPGLPGYPGRMGPKGSRGFEGPKGRPGEPGKRGSTGKPGGRGQRGKRGETGSR
GSPGPSGPIGIKGDPGENGPAGGPGERGPPGPQGPPGFPGPKGPLGPSGKDGIPGHPGPR
GESGFQGKTGPPGPAGVIGPPGGQGDVGAAGNRGFPGPQGRPGEQGLPGAEGKDGERGPP
GLPGESGKVGPPGLAGFPGPRGLRGPPGTPGTKGDPGPRGEGGPDGSPGPRGEPGPVGPI
GVPGRPGQPGPPGPAGEKGEQGEEGIMGGPGRDGLPGSQGLPGGPGPAGPPGEPGDKGDM
GIQGGRGNKGARGDPGPSGPPGPPGPIGRPGPAGNDGEPGPRGIQGNFGQKGDDGPRGFP
GPPGPIGLQGMPGPPGIKGDQGDPGPLGPPGPEGPRGNPGPSGADGPQGPPGKRGQPGRP
GEKGEPGDPGQPGLPGDAGGPGAKGDPGPKGEDGSSGMPGPPGKPGPRGEDGPKGDPGPI
GAPGDPGPVGIPGPPGQDGESGVKGERGERGQQGRPGPSGEQGPPGPPGKQGVPGLPGLE
GPAGISGDKGDSGETGPPGQAGPVGPPGPPGKSGPEGLRGIPGPPGQQGPPGPSGDPGPP
GIPGSRGISGLKGDPGPKGEKGHPGLIGLTGPIGPPGEKGERGLPGLDGPIGPKGDSGND
GPRGGPGEQGTTGLPGGRGVKGSKGYMGPAGPKGEVGAPGPPGPPGPPGGERTPLPLNIQ
KKTKRDVSDDFEGYQAVEGDGISFLDYEAGMEEIFGSLNSLKIEIEQMKAPLGTRDNPAR
TCKDLYMCHKTFPDGMYWIDPNQGCSKDAIQVFCNLTAGGETCVEPDEMRKSHRMASWRE
ENPKDWFSDYIRGFPISYTRVGVVQLTFLRLLHAKATQNFTYFCSNSVAWYDSKTGRYSK
AITLQGNNDNEYTWDSKTRPEVIYDGCKDGKYDKTVFEITTTKMFDLPITDLKVTDIGKD
DQRFGFEVGAICFS
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggatataaagagtgtagcagttcggtggatttaccacgggagaacgcgttcggactcc
acgttatcagccctgcttctagcagttcttatttcgcaccatgtggcgacaatagcagga
attgagattgagcttcccgaggggtctgcagacctcatagatatttttcaattaagggga
ttaccaaaggggatcaacaaagcaataggtttctgtgaaaaccggccggatggacctgat
gtggcatacagagtttcaaaagatgcgacgctggtggttccaaccacagagctcttccca
aatgatgcagagaagactttccctgttgacttctcggtgttattaacagtgaagccttcg
cttgcatcacggtcctacctcttcactgtcattgttgaaaataatgtacagtttggtgta
caactggctgacgtcgactgggtattcctgtatgcggacggcgagggcagaccaggcttc
gaggaatcaccccgatttaaccacaatgtagcagacggacagtggcacagaatagccttc
agtgtacagaggaacaaggtcagcatgatcatggactgtgacatcaaaaacgaggtgacc
atggacttggaccgctccccaggcgccgagggtgccatcaggacggacggcatgaccgct
ttcggcagacacttcttccgggaaaatgttgcttatgagggcttggtacaagacatcttc
atcattccagaccccctggctgcttacgaccagtgcgtcaagtacaccccagactgcccc
aagaatcaaacaactggcacactggacggcaacggcaatggcttcgacctgttcgacaaa
atcgacttcgacgcggacttgaatagaggagtcacaacggactttggcgagggggaaatc
ggacttttcggcgaatccaatgttaaggggcagaagggtgagcctgctgtcatcgaacct
ggcatgttcatcccaggaagccgtgggtaccctggtcctcctggtatcccgggaccaaga
ggttaccctggcccatctggagaccctggtgctcctggcccaaggggcccccgcggcaga
gagggtctccccggtgctgacggactgcctggacctcccggccctggaatctccatccct
ctgtctatgctggggagtctgggaatgggcgctgactgcagcaaaggacccggcggctgt
aacgaggcggccatggctgagcagatcatggcaggaatgattggaccacctggcccgtct
ggtcctgttggcattgctggaagacccggacctcctggtatgcaaggaggccttgggcct
aagggtgatgttggagagatgggacaaatgggtcctagagggcctaggggaccaatggga
ccacctggcaaggatggcaaaaggggaagacacggcaaagatggaggaagaggcccacct
ggacaggatggtctgaagggtgagaggggcttcgatggtctgccgggtctgcctggacaa
aagggtaaccggggtggtcatggttcacctggcccttctggtcctcctggagacagtgga
gacaagggagacgatggagagcgtggactgcctggaatgcccggtgagccgggtcagcga
ggtctgatgggtccacgtggtccccctggtgtccagggtcctcctggcatgcccggtaac
atgggacctggtgggatgaagggtgcaacgggagccccaggtaaaccaggtgcacctggt
ccccagggtctgatcggaccacccggatcccccggacctcagggagctgtaggaccacct
ggtctcacgggtccatcaggaaagcccggactgcctggtctgcccggagttgacggcctg
cctggtcatccaggtaaggagggagtacctggacctaagggtgccaccggaccacctgga
ccacagggccctgtcggatatcctgggagcagaggcatcaagggatcccaaggaacaaga
ggtccccctggccagaagggagacaagggtgaagatggcttcccaggtttcaagggtgac
cagggccccaagggtgaccggggcattggaggtgaaattggaccacgtggccaagaagga
cctgaaggcccgaagggccgttctggagcacctggtgaccctggacctcctggttcacct
ggtgaaaagggtaaaatgggtatccctggcctccctgggtaccctggacggatgggaccg
aagggatcccgtggttttgagggacccaaaggcagacctggggaaccaggaaagaggggt
tctacaggcaagcctggaggacgtggtcagaggggcaaacgaggagagacaggaagtcgt
gggtctccaggaccatctgggccaattggaataaagggtgatcctggtgagaacggacca
gctggtggaccaggagagaggggaccaccaggacctcagggaccccctggattcccagga
ccaaagggaccacttggaccatcaggaaaggacggaatcccagggcatccaggaccacgg
ggagaatctggcttccaaggaaagactggtcctcctggccctgctggtgtgattgggccg
cctggcggtcaaggtgacgttggagcggcaggaaaccgtggtttccctggacctcagggt
agaccaggtgaacagggattacctggagctgagggcaaggacggagaaaggggaccccct
ggtctgcctggagagtctggtaaggtgggcccacctggactggctggcttccctggacca
cgtggattgagaggaccacctggaacccctggtactaagggtgatcctggacccagagga
gagggtggacctgatggctcgcccggcccaagaggagaacctggcccagttggccccatc
ggtgtgcccggccgtcccggtcagcccggaccccccggccccgccggtgagaagggagag
cagggagaggagggcatcatgggaggacctgggagagatggactgcccggctcacagggt
ctgcctggaggacctggaccagctggaccccccggagagcctggggacaagggtgacatg
ggtatccaaggtggaagaggaaacaagggagcccgaggtgacccaggtcccagcggcccg
cccggcccccctggacccatcggcagaccaggacctgcaggtaacgatggagagcccgga
cccagaggcatccaaggtaactttggacagaagggtgacgacggtcctcgtggtttcccc
ggaccacccggtcccatcggtctgcagggcatgcctggtcccccgggtatcaagggcgac
caaggagatcccggtcctctgggcccgcctggtccagaaggtccaagaggaaacccaggc
ccatctggtgctgatggtccccaaggcccgcctggaaagcgtggacaacccggccgacct
ggagagaagggagaacctggtgaccccggccagcctggtctgcctggtgatgctggtggt
cctggagccaagggagaccctggccctaagggtgaggatggttcgtctggcatgcctggt
cctcccggcaaacctggacccagaggagaggacggccccaagggagatcctggtcctatt
ggtgcacctggtgaccctggtcctgttggaatccccggaccccctggtcaagacggagag
tctggagtgaagggtgagcggggagagcgtggacagcagggccgtcctggtccgtctgga
gaacagggtccgcccggtccccccgggaagcagggtgtccccggtctgcctggtctggag
gggcctgctgggatatctggagacaagggtgacagcggtgagacaggacccccaggacag
gctggaccagtcgggcctccgggtcctcctggtaagtctggaccggaaggcctccgcggc
atccctggacctcctggccaacaaggaccccctggaccgtctggcgaccctggccctccc
ggcatccccggatcacgaggtatctctggactgaagggagaccctggacctaagggagag
aagggccaccctggactgatcggtctgaccggtccgatcggacccccaggagagaaggga
gagagaggcctgcctggtctggacggacccattggacctaagggagattccggaaacgac
ggccctcgtggagggccaggagaacagggaacgaccggcctgcctggaggtcgcggagtc
aagggatcaaagggatatatgggaccagcaggacctaagggagaagttggagcaccagga
ccacctggacctcctggcccaccaggaggagagagaacaccactacctctgaacatccag
aagaagaccaagagagacgtgtcggatgactttgaaggctaccaggccgtggagggagac
ggcatcagcttcctggactatgaggccggaatggaggagatcttcggttcgctcaactcc
ctcaagatcgagatcgagcagatgaaggcaccactaggcacacgggacaacccagccaga
acatgcaaagacttgtacatgtgtcacaagaccttcccagacggcatgtactggattgat
cctaaccagggctgctctaaggacgccatccaggtgttctgtaacctcactgccggagga
gagacctgcgtcgagccggacgagatgcgcaaatcgcatcgaatggcatcgtggagagag
gaaaatccaaaggattggttcagcgactacataagagggttccccatctcctacacaagg
gtgggtgttgtacagttgaccttcttgaggcttctgcacgccaaggcaacacaaaacttc
acctacttctgttccaactccgtcgcgtggtacgactccaagactggccgctacagcaag
gccatcacgctgcagggcaacaatgataatgaatacacgtgggacagcaaaaccaggcca
gaagttatttatgatggctgcaaagatgggaaatacgacaagacagttttcgaaatcaca
acaacaaaaatgttcgacctgccgatcacggacttaaaggttacggacatcggaaaggat
gaccagaggttcggctttgaagtgggagccatatgtttcagctaa
DBGET
integrated database retrieval system
