Bartonella bennetti: ACJTDF_05020
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Entry
ACJTDF_05020 CDS
T11809
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
bben Bartonella bennetti
Pathway
bben02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bben00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ACJTDF_05020 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bben03021
]
ACJTDF_05020 (rpoD)
Transcription machinery [BR:
bben03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACJTDF_05020 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
CC2-LZ
Spermine_synth
Motif
Other DBs
NCBI-ProteinID:
XLI61182
LinkDB
All DBs
Position
complement(1123076..1125085)
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AA seq
669 aa
AA seq
DB search
MATKVKQKDSVEEMGKVSSDGPLLDFSDDAIKKMIKLAKKNGYVMMDELNAVLPSEEFTS
EQIEDILAMFSEMGISVIDDEDEIESEQYEEEITIEGGDLVEATNYAVATTSKREVADRT
DDPVRMYLREMGAVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQALIIWREELQEQ
RILLREIIDLEMTYSGPEAKQAPIIDGSEVKKIKEETPSYSMHDTNDLEEDIGGEDDDEE
DDEVNLSLAAMEHELCPQVVETLDFIAETYVKLRELQDKQVESSLSYRKEELLSSAERKQ
YTQLKDALIQAVKSLSLNQNRIEALVEQLYDINKRLIHSEGKLKRLASNYGIGHEDFLRE
YQGRELDADWVNYIATLSGRGWKEFSTCEAKTIQSLRSEIQNLAQETAISISEFRRIVTQ
VQKGEREANIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQILHEIGREPTPEELS
SKLSMPLEKVRKVLKIAKEPISLETPVGDEDASHLGDFIEDRNALLPIDAAIQANLRDTT
TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRS
RKLRSFLDS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggcaacaaaggttaaacaaaaagatagtgtggaagaaatgggcaaagtgagctcggat
ggtcctcttcttgatttttccgatgatgctatcaaaaaaatgattaaacttgccaagaaa
aatggctacgtgatgatggatgaattgaatgcggttcttccttctgaagaattcacatct
gagcaaattgaagatatattggcaatgttctctgagatgggtattagtgttatagatgat
gaagatgaaattgaatctgagcaatatgaggaagaaatcacaatagaaggtggcgattta
gtagaagccacaaattatgccgttgcaacaacatctaaacgtgaagtagctgaccgaact
gatgatccagttcgtatgtatttacgtgaaatgggagctgttgaattactctcgcgcgag
ggtgaaatcgctattgctaaacgtattgaggctgggcgtgaaacaatgatttctggtctt
tgtgagagccctttaacatttcaagctttaattatttggcgtgaagagttgcaagagcag
cgtattcttcttcgtgaaattattgatctcgagatgacttattctggcccagaagcgaag
caggctcccattattgatggaagtgaagtcaaaaaaataaaagaagaaacaccatcttat
agcatgcatgatacgaatgatcttgaagaagatatagggggcgaagatgatgacgaagaa
gatgatgaagttaatttatcccttgcggcaatggaacatgagttgtgtcctcaggttgtg
gaaactttagattttattgctgaaacttatgtaaaattacgcgagctacaagataaacaa
gttgaaagcagtttatcatatcgtaaagaagagcttctttcatctgcagaaagaaaacaa
tatacccaattaaaagatgctttaatccaagcagtaaaatctctttctttaaatcaaaac
cgtattgaggcattagttgagcaattatacgatatcaataagcggttaatacatagcgaa
ggtaaattgaaaaggcttgctagtaactatggcattgggcatgaagattttttaagagaa
tatcaaggtcgtgagttggatgcggattgggttaattatattgcaactttatcagggcgt
ggttggaaagaattttcaacttgtgaagctaaaactattcaaagtttgcgtagtgaaata
caaaatcttgcgcaagaaactgctatttcaattagtgaatttcgccgaattgttacgcaa
gtacagaaaggggagcgtgaagcaaatatcgctaaaaaggaaatggtggaagctaatttg
cgtcttgtgatttcaattgccaaaaaatacactaatcgtggcttacaatttcttgatctt
attcaggaaggcaatatcggtttgatgaaagctgttgataaattcgaatatcggcgtgga
tataaattttcaacttatgcgacatggtggatacgtcaagcaattacgcggtctattgct
gatcaggcacgtaccattcgtattcctgttcacatgattgagacaattaataaaattgtt
cgtacatcacgccaaattttacatgaaattggacgtgaaccaacaccagaagaactctct
agcaagctttctatgccattagaaaaagtgcgaaaagtgcttaagattgcaaaagagcct
atctcacttgaaacacctgttggtgatgaagatgcttctcatttaggtgattttattgag
gatagaaacgcattattaccaattgatgcagctattcaggctaatttacgagatacaaca
acacgtgttcttgcttcattaacgccacgtgaagagcgtgttttacgaatgcgttttggt
attggaatgaatactgatcatacattagaggaagttggtcaacagttttcagttacccgc
gagcgtattcgtcaaatcgaagcaaaagcacttcgtaagttgaaacatcctagccgttca
cgcaaattacggagctttcttgattcttaa
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