Besnoitia besnoiti: BESB_019140
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Entry
BESB_019140 CDS
T10139
Name
(RefSeq) RNA helicase (UPF2 interacting domain) protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
bbes Besnoitia besnoiti
Pathway
bbes03013
Nucleocytoplasmic transport
bbes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbes00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
BESB_019140
03015 mRNA surveillance pathway
BESB_019140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbes03019
]
BESB_019140
Enzymes [BR:
bbes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BESB_019140
5.6.2.5 RNA 5'-3' helicase
BESB_019140
Messenger RNA biogenesis [BR:
bbes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
BESB_019140
mRNA cycle factors
Common to processing body (P body) and stress granule
BESB_019140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
AAA_30
AAA_19
UPF1_1B_dom
DEAD
AAA_25
SLFN-g3_helicase
AAA_22
nSTAND3
ResIII
AAA
NPHP3_N
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
40306975
NCBI-ProteinID:
XP_029215982
UniProt:
A0A2A9M8F9
LinkDB
All DBs
Position
XI:<154636..>165304
Genome browser
AA seq
1448 aa
AA seq
DB search
MASPTIFDISDFIFDAADLNFTPNSGPALCEVSGGDNGGEQSSHPSCGGGDEPCLHSLAF
NHEGSRKLGVEDVKQASGADAKMKDDNSHNGVCSSNVAVEEPQTELGHATDRLRLGREPG
DFTVPTRRGLAVTGEGLLAEQPESADTAECVDELREGFREPCSEPQRTNGVPRSEEGHGG
EAAQPGFDCEPRTPAELPAHACSYCGASSPECVLKCCCCNKYFCNSPCSNSGSSMGSHII
FHLVRSRHREVMLHPEGPLGDCTLECFQCGSRNVFLLGLIPAEQEGVVVLICREPCLSSS
ALKQSGWDLSHWQPLIEGKSFLPWLVRPTLTAAERRDCRVVTTQQLQRLEELWQKNPQAT
LEELSQTKEEEVLPSVKLVYEDGFDYQRTFAPLVQAEADYDKQMRDGQKLVKVKLRWEQG
LNRRRLAYFMYARDEGCNVRLAAGDEVKITTALPKSVIGASSATASASSAGAARAATAHG
SSDAPGASASTGSSAADGGADGEDLVQWSCTGSITRFSEDSEEVIVEVKKSSNGKGAWDS
PVPLLYTIEFVWKSTSFERMQNALRQLAVDEISVSSYLYHTLMGKQMEHQIIQTPMPSHI
SAPNLAPLNPSQMLAIRYALQHPLSLIQGPPGTGKTLTCSTLVYQMVKLSEMGSHLHPRG
AGGFNKEGGQVLVVAPSNVAVDQLAERINRTGLKVIRVYSKSREFAYTALGSSFSMENLA
LHKKVLELKTASSDEIAKYLQLKEHTGELAPADERRLRLLLSRAEMEILQTADVICTTCV
GAGDNRLQGFRFRQVVIDEATQATEPECLIPVVLGAKQVVLIGDHCQLGPVVLSKKAAAA
GLATSLFSRLLALGHRPLRLKVQYRMHPALSFFPSYFFYEGELQNGVTMKDRTYVHRGPG
DHRFPWPSEERPMFFYHSTAAEEISGSGTSYVNRVEAGNIEKIVTFLLKCGLKASQIGVI
TPYDGQRAHISSLFQRQTTLGQAAFADLEVASVDAFQGREKDFILLSCVRSNSNTGIGFL
ADARRLNVALTRAKYGLIICGNASVLANYVPRMPRPPPSSSPLQPGGIAPGLAPGVLGPC
GAVVGPGGPAVPGVACVPEPPIWRLLIHHYLKYDLVVDGPLSNLKPSKIRVALPPLTPLG
ALMATGGLAKGGKNGAGAAKAGKGLGKTKAASRYIAPEELQDYNRNSTTSSGYLQSVSSP
GGLASAGQASHLAGTYALNGPSGGYAYGGTPLYPSPAFAALLGAERGFQTQQTAFPSSSL
MAAHAAASSSFCYGAPGGAGGGPAGSSSVAAGALEQQTLRAPSAYFAGREGAAGGAGLSF
GGGPGAAGSGANAGNSTASQPGGGGVCARGTSRSADGPFSGTSGLGGGTLGMPTGAGSRG
GARHTDRDQRTEATYVADRDGKALRRTALDLRDEQGANSSKRPGRAATVVSEQLDDDSFT
FIGSQVGF
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccaaccattttcgatatctcggatttcatttttgatgcggcggacctcaat
ttcactccgaacagcggcccggcactctgtgaagtttctgggggagataatgggggtgag
cagtcatcgcatccttcttgtggaggaggcgacgagccgtgcctgcattccttagctttc
aaccacgaaggcagcaggaaactgggcgtggaggacgtaaaacaggcttctggtgcagac
gccaagatgaaggatgacaattcgcataatggggtatgttcatcaaatgtggctgtggag
gaaccgcagaccgaactgggtcatgcgactgatcgtctgcgtctggggcgagaaccaggc
gacttcaccgttcctacaaggcgcggactcgccgtgacaggggaaggtttgttggcagag
cagccggagtccgctgacaccgctgaatgtgtggacgagctgcgcgaagggtttcgtgaa
ccgtgtagtgagcctcagcggacaaacggcgtgcctcgctccgaagaggggcacggaggc
gaggccgcccaacctggatttgactgtgaaccgcgaacccccgccgagcttccggcgcac
gcatgcagctactgcggcgccagctcacccgagtgtgtcttgaagtgctgctgctgcaac
aagtacttctgcaacagcccctgcagcaacagcggaagcagcatggggtctcacatcatc
tttcacttggtcaggagccgacacagagaggtcatgcttcacccggaaggaccactcggc
gattgcacccttgagtgttttcagtgcgggagtcgcaacgttttccttctcggtctcatt
cctgcggaacaagaaggagtggttgtcctcatctgtcgggagccgtgcctctccagcagc
gctttgaagcagagcggttgggatctgtctcattggcagccgctgattgaaggaaagtcg
tttcttccgtggctggtccggcccacgctcacggcggcggagcggagagactgccgagtc
gtcaccacgcagcagcttcagcgccttgaagagctctggcagaagaacccgcaagccact
ctggaggaactcagtcaaacaaaggaagaagaggtgctcccgagcgtcaagttggtgtac
gaggacggcttcgactaccagcggacatttgcgccgcttgtgcaggccgaagcggactac
gacaagcagatgcgagacgggcagaagctggtgaaagtcaagttgaggtgggaacaaggc
ttgaatcgtcgccgtctggcgtacttcatgtacgcacgcgacgaaggctgcaacgttcgt
ctggcagccggagacgaggtgaagatcaccaccgctttacccaagtcagttatcggggcc
tcctccgcaacggcctccgcttcgagtgccggtgcggctcgagcggcaactgcgcatgga
agctccgatgcgccaggggcgagcgcctcgacgggcagctcagcagccgatggcggagcg
gatggagaggacctggtacagtggagctgtaccggaagcatcacgcggttttctgaggac
agtgaggaagtcatcgtggaggtgaagaagtcgtcaaatgggaagggagcgtgggacagc
cccgtgccgttgctgtacacgattgagttcgtctggaaaagcacgtccttcgagcgcatg
cagaacgctctgcgccagctcgccgtggacgagatcagcgtgagcagctacctgtatcac
acgctcatggggaagcaaatggagcatcagatcattcagaccccgatgccgtcgcatata
tctgctccgaatctagctcctctgaatccgagtcagatgctcgccattcgttatgcactt
cagcacccgctttcgctcattcaggggccgcccgggacggggaagactctgacctgcagc
acgctcgtctaccagatggtgaagctgagcgagatgggttctcacctgcatccgcgtggg
gccggaggcttcaacaaggaaggcggacaggtgctggtggtcgctccgagcaacgtcgcc
gtcgatcagttggccgagagaatcaacaggacgggcctcaaggtcattcgcgtgtactcc
aagtcccgcgagttcgcgtacaccgcgctcggttcgtccttctccatggagaatctggcg
cttcacaagaaggttctggagctaaagaccgcgagcagcgacgagatagccaagtacctc
caactgaaagagcacaccggcgagctcgcgcctgctgatgagcgccgcctgcggcttctg
ctttcgagggcggagatggaaatccttcagacggccgacgtcatttgcacgacttgcgtc
ggcgcaggagacaatcgcctccagggcttccgcttccgccaggtcgtgattgacgaggcc
acgcaagcgaccgagccggagtgcctcatccccgtcgtactcggagccaaacaggtcgtg
ttgatcggcgaccactgtcagctggggccggtggtgctgagcaaaaaagcggcggccgcg
ggcctggcgacttctctcttctcccgtctgctggcgcttggccaccgccctttacggctg
aaggtgcagtatcgcatgcaccctgctctttcgttctttccctcttacttcttctacgaa
ggcgagctgcagaatggcgtgacgatgaaggatcgaacctacgtgcaccgggggccgggc
gaccaccggttcccgtggcccagcgaggagaggccgatgtttttttaccactcaaccgcg
gcggaggagatcagtggatcggggacgtcgtacgtcaacagagtggaggcgggcaacatc
gagaagatcgtgaccttcctcttgaaatgtggcttgaaggcatcgcagatcggcgtcatc
acaccgtacgacggacagcgggcccacatctcctcgctgttccagcgccagacgaccctc
ggacaagcggcctttgcggacctcgaagtagcatcagtagatgcatttcaaggacgagaa
aaggatttcatccttctttcctgcgtccgctccaatagcaacactggtatcggctttttg
gcggacgcgcggcgcttgaacgtggcgttgactcgagccaagtatggcctgatcatctgc
ggcaacgcatccgtcctcgcgaattacgtgccgcgcatgccgcgacccccacctagctca
tctcccctccagccgggaggcatcgctcctggtctggctccaggcgtgctcggcccctgc
ggcgccgtcgtaggtccagggggccctgcggtccccggggttgcctgcgtccccgaaccg
cccatctggcggctgctgattcatcactacctcaaatatgatttggtcgtcgacggcccg
ctgagcaacttgaagccatccaagatccgtgtggcgctgccgcccctgaccccgctggga
gccctcatggcgaccggcggcctcgcaaagggagggaagaacggcgctggtgccgcaaaa
gctggcaagggtctcggcaaaacgaaggcggcgtcgagatacatcgcccctgaggaactg
caagactataaccgtaactcgacgacctcgtctgggtatctccaaagtgtctcgtctcct
gggggtctagcatccgcgggtcaggcatctcatctcgcggggacctacgcactgaatgga
ccctccggcgggtatgcttacggcggcactccgctttaccccagtcctgcctttgctgca
ctcttgggagctgagcgaggcttccaaactcaacaaaccgctttcccgtcgtcgtctctc
atggctgcgcatgcggcggcaagcagcagtttctgctatggggccccggggggtgcaggg
gggggaccggcggggtcgtccagcgtcgctgctggcgcccttgagcagcagacgcttcgg
gctccttcggcgtatttcgcggggcgggaaggcgccgctgggggggcgggcctctccttc
gggggaggcccgggggccgctggaagcggggcgaatgcgggcaacagcaccgccagccag
cctgggggaggcggggtctgcgcgagaggcacgagccggtccgccgacgggcctttcagc
gggacatccggcctcgggggcggcacgctcgggatgccgacgggggcgggaagtcgcgga
ggagccagacacacagatcgagaccagcgaactgaggcaacatacgtggctgacagagac
ggaaaggccctgcgacgcacggctttagacctgcgagacgagcagggcgccaactcctcg
aagcggcccggccgagccgcgactgtcgtgtccgaacagcttgacgatgattccttcacc
ttcatcggtagccaagttggattttga
DBGET
integrated database retrieval system
