Besnoitia besnoiti: BESB_061210
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Entry
BESB_061210 CDS
T10139
Name
(RefSeq) DNA-directed RNA polymerase II RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bbes Besnoitia besnoiti
Pathway
bbes03020
RNA polymerase
bbes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BESB_061210
09124 Replication and repair
03420 Nucleotide excision repair
BESB_061210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbes03021
]
BESB_061210
03400 DNA repair and recombination proteins [BR:
bbes03400
]
BESB_061210
Enzymes [BR:
bbes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BESB_061210
Transcription machinery [BR:
bbes03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
BESB_061210
DNA repair and recombination proteins [BR:
bbes03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
BESB_061210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
40311049
NCBI-ProteinID:
XP_029219243
UniProt:
A0A2A9MDF4
LinkDB
All DBs
Position
V:2098950..2108445
Genome browser
AA seq
1902 aa
AA seq
DB search
MSSLSSSAALYSSAPLKRVDALQFGVFSSEQIRKMSVCEVTTSELYENGMPKPNGLNDLR
LGTLDYRLQCRTCNMDVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDR
RDPKIQHLVKIRSPCRRLKHVLDACAGRKRCEGYMPLPADGAAPPAEGGEGGCGCVQPRY
FKEGPNIVVLFPESRDEGDEDAPEDVRRIFAAEEAYAVLRRISEEDLKTMGFDPERAHPA
SFILSTLPVPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQGDSVPSAVLQEMVM
LLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRTRLKGKEGRLRGNLMGKRVDFSARTVIT
GDPMLPIDTVGVPKSIAMTLTYPEFVTPLNINQLRQLVKTGPFDWPGAKYVIRDDGSRFD
LRHAKKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSV
TSPYNADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKF
TRRDTFLTKPMVFNLLLQIPYWSGVVPPPAIFHPVPLWTGKQLFSLLLFFDSAGTGGSTK
SRINMQRDVGAGLVDRKKENLFISERDERVVIRQGELLAGKICKKIVGSASGSLIHLLWL
EAGPERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLTR
LAHRGRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGST
INISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPPSRGFVENSYLSGLEPHELFF
HAMGGREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSG
EYVEDQTVELMTLDNEKLKRLFRHDVDQESYGKGWLSDDMRNEILTDFELQQPLEEEFEA
IREDKNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPGGDQFRRQNPIEIARKVNELLN
DKLVVVKQTTKADAISAEVQENATIFMKAHLRTVLNSRRLLERERVGPKALQWLLGEVER
QFHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQV
KTPSLTVYLQDEIAMDQERAKDVQTHLEHTTLDRVTVMSQVIYDPDPTDTIIPQDRQWVR
DYYEFPDDDELPNNLGRWLLRVQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDN
SDDLVLRIRIKHQPGMGEGGEEEKDEDDVSEAEDRFLQKLMMQCLAGITLRGITNISKVY
MREEARTVYNAQLGKFERTNNWVLDTDGCNLEDVLPIPMVDNTRTTSNDMTEIFHVLGIE
AVRRALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSF
EETVEILMEAAVFAETDHLKGVTENIMVGQLCPLGTGYFDVLIDEEKLKDASHNLDGVGL
VGGDLDGFLGASPAGAASDPHLITPDGSFTPSPHQLNSVFSPMPFSTVYTSFATSPTNPL
SPTALGGSNAAGVDTQQLGGKFSPTQQTPRSPTSPMSPLTCFSPRDPHSPLSPGAGPPGG
VFSPTSPILGSALETSSLSYSPSSPQSAYFQGDGSSSSVDMVISPGGVDSDGSRVRGGSS
YSPTSPTLSPSYSPSSPPSYSPTSPAYSPTSAVMSVTSPVDKGGRVMSPFSPGNNPMSPH
FSASSPSYSPTSPVQQSNPTSPTSPYSPAYSPTSPRYSPTSPMYSPTFAPYSPQSPSYGG
APGQGPLSPSFNVQSPRYSPSSPAAYSPTSPMPNVNTSPSYDDAHAGGGGTYSPTSPMYE
ANDPFSPDPFAAEVVDEVGDEAALDSPTGDGNPVNEGDGAQA
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgctttcgtcctcggcggcgctgtattcgtcggcgccgctgaagcgcgtcgac
gcgcttcagttcggcgtattttcctctgaacagattcgcaagatgtcggtctgcgaggtg
accacgtctgagttatacgagaacgggatgccgaagccgaacgggctgaacgacttacgg
ctggggacgctcgactaccgcctgcagtgtcgcacgtgcaacatggacgtgaagaactgc
ccgggtcacttcgggcacctgaacctcgtgaagccggtttaccactacgggttcctgggc
gcggtgctgcgcgtcctccgctgcgtgtgctacgcgtgcggcaagctgctcgtcgaccgg
cgcgaccccaagattcagcacctcgtgaagattcgctcgccctgccggcggctgaagcac
gtcctcgacgcctgcgccggccgcaagcgctgcgaggggtacatgcctctcccagcggac
ggcgccgcgccgccagccgagggcggcgagggcggctgcggctgcgtgcagccccgctac
ttcaaagagggtcccaacatcgtggtgctgttccccgagagccgcgacgagggcgacgag
gacgcgcctgaagacgtccgccgcatcttcgcggcggaggaggcgtacgccgtgctgcgg
cgcatctctgaggaagacctcaagacgatggggttcgatccggagcgcgcgcatcccgcc
tcgttcatcctctccacgctccctgtcccgccgctggctgtgcggccctccgttcagtac
gggagcgcccgcagcgaagacgacttgacgctcaaactcgtcgacatcgtgaaaaccaac
ctttcgctcaagcgacagggcgacagcgtgcccagtgccgtcctccaagagatggtcatg
ctgctgcagtaccacgtgactacgctcttcgacaacgacatccctggcatgcccgtggcg
accactcgcgggaaaaaacccatcaagtccattcgcacgcgactgaagggcaaggaaggc
cgccttcgcggaaacctcatgggcaagcgcgtagatttctccgcgcgcaccgtcatcaca
ggagaccccatgctgccgatcgacacggtcggcgtgcccaagagcattgcgatgacgctg
acctaccccgagttcgtcacgccactcaacatcaaccagctgcggcagctggtcaagact
ggacccttcgactggcccggcgcgaaatacgtcatccgcgacgacggcagtcggttcgat
ctccggcacgctaagaagggcggtgaagttgtcttggaagttgggtaccgtgtcgagagg
cacatgcgtgacggcgactttgtgctgtttaatcgacagccatcgcttcacaaaatgtct
ataatgggtcaccaagtcaagatccttccctactcgactttccgcctcaacctgtcggtc
acgtcgccctacaacgccgatttcgatggagatgaaatgaacttgcatttggcgcagagc
gaagaaacacgcgcagagatcaaacatctgatgaaagtcccgaaacaaatcgtctcgccg
cagggaaacaaacccgtcatgggtatcgtgcaggactcgctgttggcggtgagcaagttc
acgcgccgcgacacgtttttgacgaagccgatggtgttcaacttgctgctgcagattccg
tactggagcggcgtggtgccgccgcctgcgatttttcatcccgtcccgctgtggacgggg
aagcagcttttttcgctgttgctgtttttcgactccgccggcacgggtggcagtaccaag
tcgcggatcaacatgcagcgcgacgtcggggcgggccttgtcgaccggaagaaggagaat
ctgttcatcagcgagcgcgacgagcgcgtagtaatccgccagggcgagttgctggcgggt
aagatctgcaagaagatcgtcggctcagcgagcggctcgctgattcacctgctctggctc
gaggccggacccgagcgcaccaaggacttcctctcgacgctgcagaagctgacgaactac
tggctgcttcaccagggcttcactgtcggctgcaaagacatcatcgcgaacgaagagacc
aacgaaaaagtgcgcgacatcctcgaccaagccaagaaggaagtcgacaaactcacgcgc
ctcgcccaccgcggtcgcctcgagtcgcaacccggtaaaagcctgcgcgagagcttcgag
gcccgcgtcaacaaagagctcaacagcgcccgcgaacgcagtggaaaagtcgccgcagaa
agcctcgacgaatccaacaacatcatggctatggtgttggctggctcgaagggaagcacg
attaacatctcgcagattatggcctgcgtcggtcagcagaacgtcgagggcaagcgaatt
cccttcgggttcaacgagcgctccctgccgcatttccacaagttcgactactcgccgccc
agtcgcggctttgtcgaaaacagctacctttcgggcttggagcctcacgagctcttcttc
cacgccatgggtggtcgcgaaggtattatcgacacggcctgcaagacttcagagaccggg
tacattcagcgtcgtctgatgaaggcgatggaggacgtgatggtctactacgaccgcaca
gtgcgcaactcgatttgcgaggtgcttcagtttttgtatggagaggacggcatgagcggc
gagtacgtggaggatcagacggtagagttgatgactctggacaacgagaagctgaagcgg
ctcttccgccacgacgtcgaccaggagagctacgggaaggggtggctgtcggatgacatg
cgcaacgagattttgacagactttgagctgcagcaaccgctcgaggaggagttcgaggcg
atccgcgaagacaaaaaccgcctctgcaggcacatcttcaaggacggcgagaccaagcag
cacattcccatcaacatcttgcgcctgctcgagttcgccaaagcgcagttcccgggcgga
gatcagttccgcaggcagaacccgatcgaaatcgcccggaaagtgaacgagctgctcaac
gacaaactcgtcgtcgtcaagcaaacgaccaaggcggatgcaatctccgcagaagtccaa
gagaacgccactatcttcatgaaggctcacctccgcaccgtcctcaactccagacgcctc
ctcgaacgcgagcgcgtcgggcctaaggccctgcagtggctgcttggagaagtcgaacgc
cagtttcaccgcgccctggcgcacgcgggcgagtgcgtgggcgcgattgcggcgcagtcg
attggagagccggcaacgcagatgacgctgaacacttttcactttgctggtgtcggaagc
aaaaacgtcacgctcggtgtgccgcgcctcaaggagctgatcaacgtcgcgaagcaagtc
aagacgccctcgctgacagtctacctgcaggatgaaatcgcgatggatcaagagcgagcc
aaggacgttcagacgcacttggagcacacgacgctggaccgcgtgacggtgatgtcgcaa
gtgatttacgaccccgatccgaccgacacgattatcccgcaagacaggcagtgggttcgc
gactactacgagttccctgacgacgacgagttgccgaacaatctgggtcggtggctgctg
cgcgtgcagatggcgagcaaggtgatgattgacaagaagctcacgatgaaggagattggc
gagaagatctacgctgagttccccaacgaggagctggactgcatctggaccgacgacaac
agcgacgacttggttttgcgcattcgcatcaaacaccagccgggcatgggcgagggcggc
gaggaggagaaggacgaagacgacgtctcggaggcagaggaccgcttcctgcagaaactc
atgatgcagtgcctcgccggcatcaccctccgaggcatcacaaacatctccaaggtgtat
atgcgcgaggaggccagaactgtctacaacgctcagctcggcaagttcgagcgaacgaac
aactgggtgcttgacacggacggctgcaacttggaagacgtgcttccgattccgatggtc
gacaacacgcggacgacttcgaacgacatgaccgagatcttccacgtgttgggcatcgaa
gcagtccgccgggcgctgctgcgcgagctgcgcgcggttatttctttcgacggcagctac
gtgaattatcgacacctggcgattctctgcgacacgatgacgcagaagggctacctgatg
agcatcacgcgccacggcatcaaccgcatcgacaaagggccgctgatgaagtgtagcttc
gaggagacagtcgagatcctcatggaggccgcagtctttgcggaaacagatcacctgaag
ggcgtcacggagaacatcatggtcgggcagctctgtccgctgggaacgggttactttgac
gtcttgattgacgaggagaagctgaaggacgcctcgcacaacctcgatggagtcggtctc
gtcggcggagacttggacggcttcctgggcgcgtcgccggcgggcgcggcgtctgatcca
cacctgatcacgccggatgggtccttcacgccttcgccgcaccagctgaactcggtcttc
tcgccgatgcccttctccacggtatacacgtccttcgcgacgagcccgacgaacccgctg
tctccgaccgcgctcggcggctccaacgccgcgggcgtcgacacgcagcagctcggcggg
aagttctcccctacgcagcagacgccgcggtcgccgacctcgcccatgtcgccgctgacc
tgcttctcgccccgagacccgcacagtccgctgtctccaggcgcaggcccaccgggcggc
gtcttctcgccgacctcgccgatcctcggcagcgccctggagacctcctcgctgtcctac
tcaccctcctcgccgcagtctgcgtacttccagggcgacggcagctcgagcagcgtggac
atggtgatatctcccggcggcgtcgactcagacggcagccgtgtccgcggcggctcgtcg
tactcgccgacgtcgccgaccctgtcgccgtcgtattcgccctcctcgccgccgagctac
tcgccgacttcgcccgcgtactcgcccacgtcggccgtcatgagcgtcacgtcgcctgtc
gacaagggcgggcgcgtcatgagtcccttctccccgggcaacaaccccatgtcgccgcac
ttctccgcgtcctcgccctcctactcgcctacctcccccgtccagcaaagcaacccgacg
tcgcccacgtcgccctattcgcccgcgtactcgccgacctccccgagatactcgccgacc
tcccccatgtactccccgaccttcgccccctactccccgcaaagccccagctacggcggc
gccccgggacagggacctctttcgccgagcttcaacgtccagtctcctcggtattcgccg
tcgtctcctgccgcgtactcgccgacgtcgccgatgccaaatgtgaacacgtcgccctcg
tacgatgacgcacacgcaggaggcggcggaacctactccccaacttcgccgatgtatgag
gcaaatgatcccttctcgccggatccgtttgccgcagaggtggttgacgaggtgggcgac
gaggcggcgcttgacagccccacaggcgatggcaaccccgtgaatgaaggcgacggcgca
caagcctag
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