Besnoitia besnoiti: BESB_077720
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Entry
BESB_077720 CDS
T10139
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide DDX39
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bbes Besnoitia besnoiti
Pathway
bbes03013
Nucleocytoplasmic transport
bbes03015
mRNA surveillance pathway
bbes03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bbes00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
BESB_077720
09122 Translation
03013 Nucleocytoplasmic transport
BESB_077720
03015 mRNA surveillance pathway
BESB_077720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbes03019
]
BESB_077720
03041 Spliceosome [BR:
bbes03041
]
BESB_077720
Enzymes [BR:
bbes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BESB_077720
Messenger RNA biogenesis [BR:
bbes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
BESB_077720
Spliceosome [BR:
bbes03041
]
Complex C
Other components
EJC/TREX
BESB_077720
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
BESB_077720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
40312698
NCBI-ProteinID:
XP_029217564
UniProt:
A0A2A9M6E9
LinkDB
All DBs
Position
VII:complement(1242280..1245674)
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AA seq
434 aa
AA seq
DB search
MTTLEQNPADELVDYEEDEQNDAKEKGVEDVVVGRGNYVSIHASGFRDFFLKPELLRAIG
DAGFEHPSEVQHETIPHAITGVDVLCQAKSGMGKTAVFVLSILQQLNVDASGEEGNTQGV
VCLGIAHTRELAFQIKNEFDRFSKYLKNVKCEVVYGGISIQKNIDMLKDSKTTPHILIGT
PGRVLALIKGKHLNAEKVAHFVLDECDKCLEKLDMRKDVQNIFMATPKKKQVMFFSATMN
KEIRDVCKRFMQSPVEVFIDDESKLTLHGLLQYYVKLQESEKNRKLNDLLDTLEFNQVII
FVKSVSRAQALDRLLTECNFPSIAIHAGLDQEERINRYQQFKNFEKRIMVATDLFGRGID
IERVNIVINYDMPDSSDSYLHRVGRAGRFGTKGLAITFVASQDDTNVLNDVQTRFEVHIA
EMPQSIDASQYINQ
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacgactctcgagcagaaccccgcagacgaactggtcgattatgaggaagatgagcaa
aatgacgccaaggagaagggagtcgaggacgtcgttgtcggtcgcggaaactacgtgtcc
atccatgcgtctggcttcagagacttcttcttgaagcccgagctgctgcgtgccattggc
gacgcaggctttgagcacccgtccgaggtccagcatgaaaccattccccacgctatcaca
ggcgtcgacgtcctctgccaggccaaatcaggaatggggaagaccgccgtcttcgtgctg
agtatcctccagcagctcaacgtggacgcgagcggagaggagggcaacacgcaaggcgtt
gtgtgcctgggcatcgcccacacccgcgagttggctttccagataaagaatgagttcgat
cgcttcagcaagtacctgaagaatgtcaaatgcgaggtggtttacggcggcatcagcatc
cagaagaacatcgacatgctgaaggactccaagaccacgccgcacatcctcatcggtacc
cccgggcgcgtccttgctctgatcaagggaaagcacctgaacgcagagaaggtcgcgcac
ttcgtgctggatgagtgcgacaagtgcctggagaagctcgacatgcgcaaggatgtgcaa
aacatcttcatggcgaccccgaagaagaagcaggtcatgttcttctctgccacaatgaac
aaggaaatccgcgatgtctgcaagcggttcatgcagagccccgtcgaggtgttcatcgac
gacgagagcaagctgactctccacggtctgctgcagtactacgtcaagctccaggagtct
gagaagaacaggaagttgaacgacctgctcgataccctggagtttaaccaggtcataatt
ttcgtcaagagtgtctctcgcgcgcaggctctggaccgcctcctcacggagtgcaacttc
ccgtcgatcgccatccatgccggcttggaccaggaggagcgtatcaatcgctaccagcag
ttcaagaacttcgagaagagaatcatggttgccacagacctgttcggccgtggtatcgat
atcgagcgtgtgaacattgtcatcaactacgacatgcctgactccagcgactcgtacctt
caccgcgtcggtcgcgccggtcgtttcggaaccaagggtttggccatcacctttgtggct
agccaggatgacaccaacgtcttgaatgacgtccagacgcgcttcgaggttcacatcgct
gaaatgccccagagcatcgacgcctctcagtacatcaaccagtag
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