Bradyrhizobium betae: F8237_00250
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Entry
F8237_00250 CDS
T06368
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbet
Bradyrhizobium betae
Pathway
bbet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8237_00250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbet03019
]
F8237_00250
03009 Ribosome biogenesis [BR:
bbet03009
]
F8237_00250
Enzymes [BR:
bbet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F8237_00250
Messenger RNA biogenesis [BR:
bbet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F8237_00250
Ribosome biogenesis [BR:
bbet03009
]
Prokaryotic type
rRNA processing factors
F8237_00250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
QFI70937
UniProt:
A0A5P6NXU8
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All DBs
Position
60492..63569
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AA seq
1025 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEAEEQAHREAEEESENRSHGRRRSRHRNSR
RRSQGERVRSDIVEGADLAAQPVDGEARLEHAEGASHEGEHLHADAEHHGEHEGHDHHDH
DHGEHDHDHHHHAHDDDHHHAHDHDDHGHDGEHDHHDHDHTDETPAPVAAFGAEPVVATE
TAAEPREAAASEAHAEALAEAVTAAAEPADTVYAAGESNEAPHHDSEEEDDDEDEDDEDA
EEEVVESVGGDDVLEEVPARTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYL
SLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGAARTKPE
IKRDFEYLIRMWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEISVAGEAGYRE
ARDFMKMLMPANVSAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALV
SIDVNSGRSTREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVE
RKLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASMLESSTDPCPHCGGTGHLRSVSSVA
LQLLRGLEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENGFKVSLSVIADPSVSG
PQAYLIDRGEQVHTLEAAKALLVAQAAVSPPLAVEEAYDDEEFDPETESEVETEETEGLT
EEQAAGDAATEQDGQRRKRRRRRRGRGQRDGELREDSPPTLPEPAIAAGEGEEDTESEQD
GGEDGEEQAARGEQQGSGDRRRRRGRRGGRRRRGGNEEGLAGSIGDELGGNAPPEASDAV
ADFDGASGEAAPSIAHSEHVNIVEPQVAQPEPRVEPQAEAPAQPQLLVADEEPADDKAAR
RRSTVREKVSFLSGSSSEPAAPVASAPEPVAPPPPAPEPGPEAATETSSAPRRAGWWSRR
FGGGE
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgatgccacccacccggaagagacccgggtcgtcgtggtc
cgcggcaatcgcgtcgaagagtttgatttcgagaccgcgcaacgcaagcaactgcgcggg
aacatttacctcgccaaggtcacgcgggtcgaaccctcgctacaggcagccttcgtcgag
tatggcggcaaccgccacggcttcctcgccttcagcgaaatccatcccgactactaccag
atcccggttgccgaccggcaggcgctgatcgaggccgaagaacaggcccatcgcgaagcc
gaggaagagagcgagaaccgctcccacggccgccgccgctcacgccaccgcaactcccgc
cgtcgcagccagggcgaacgcgtccgcagcgacatcgtcgaaggcgccgatctggcggcc
cagccggtcgacggcgaggcccggctggagcacgccgagggcgcttcgcacgaaggcgag
catctgcacgccgatgcggagcatcacggcgagcacgaaggacacgatcatcacgaccac
gaccatggcgaacatgatcacgaccatcatcatcatgcccatgatgacgatcaccatcac
gcccacgatcatgatgatcatggtcatgacggcgagcacgatcatcacgaccatgatcat
accgacgagacccccgcgcctgtcgcagcctttggcgccgagcccgtggttgcgaccgag
accgccgccgagccgcgcgaagctgccgcctccgaggcgcacgccgaggccctggccgaa
gccgtgaccgccgcggcggaaccggccgatacggtgtacgccgccggcgagagcaatgag
gcccctcatcacgactccgaagaggaggatgatgacgaggacgaggatgacgaggacgcc
gaagaggaagtcgtcgaatccgtcggcggtgacgacgtgctcgaagaggtgccggcacgc
accttccgcccgcgccgccagtacaagattcaggaagtcatcaagcgccgccaggtgatg
ctggtgcaggtggtcaaggaagagcgcggcaacaagggcgcagcgctgacgacctatctc
tcgctcgccggccgctatgccgtgttgatgcccaacaccgcgcgcggcggcggcatcagc
cgcaagatcaccagcgcgcaggaccgttcccgcctgaaggaagtggtgcaggacctcgac
gtgcccgagggtatgggcatcatcctgcgcaccgcaggcgccgcccgcaccaagcccgag
atcaagcgcgacttcgaatatctgatccggatgtgggagacggtgcgcgacctgacgctg
aagtcgcaggccccgaccctcgtctacgaggaaggctcgctgatcaagcggtcgttgcgc
gacctctacaacaaggaaatcgacgagatctcggttgccggcgaagccggttaccgcgag
gcgcgcgacttcatgaagatgctgatgcccgccaatgtcagcgcggtgaagcagtatcgc
gacggccagccgctgttctcgcggatgggcgtcgagagtcagctggacgcgatgttctcg
ccgacggtgcagctgcgctccggcggctatatcgtgatcaaccagaccgaggcgctggtc
tcgatcgacgtcaactccggccgatcgacccgagagcatcacatcgaggacaccgcgctc
aagaccaatctggaggcgtccgaagaggtcgcccgccagcttcgcctgcgtgacctcgcc
ggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgcgcggtcgag
cgcaagctgtccgattgcctcaggcaggaccgcgcgcgcatccaggtcggccgcatctcg
catttcggcctgctcgagatgtcgcgccagcgcatccgtgccagcatgctcgagagttcg
actgatccctgcccgcattgcggcggcaccggccatttgcgatcggtgtcctcggtcgcg
ctccagctcctgcgcggccttgaagaaatcctgatgaagggcgcgacccataatctggtg
gtccgcacccgcaccgacgtcgcgctctatgtgctcaaccacaagcgcggtcatctgcgc
gatctcgaaaacggcttcaaggtctctttgtcggtcatcgccgaccccagcgtgagcggc
ccgcaggcctatctcattgaccgcggcgagcaggtgcacacgctcgaagccgccaaggcg
ctgctcgtggcgcaggcggccgttagcccgccgctggccgttgaagaggcctatgacgac
gaggaattcgatccagagaccgaatccgaggtcgagaccgaggagaccgaaggtctcacc
gaagagcaggctgccggcgacgccgcgaccgagcaggacggccagcgccgcaagcgccgc
cgccgccgccgcggccgtggccagcgcgacggtgagcttcgcgaggacagcccgcccacc
cttcccgaaccggccattgcggccggcgaaggcgaggaggataccgaatccgagcaggat
ggcggcgaggacggcgaggagcaggcagcccgtggcgagcagcagggtagcggcgatcgc
cgccgccggcgcggtcgccgtggcggacgccgtcggcgcggtggcaacgaggaaggtctc
gccggctctatcggcgacgaactcggcggcaatgcgcctccggaagcgagcgacgccgtc
gccgatttcgacggggcgagcggcgaggctgcgccctcgatcgcgcattccgagcacgtc
aacattgtcgagccgcaggtcgctcagcctgagccacgcgtcgagccgcaagccgaagcg
ccggcccagccccagctcctggttgcagacgaagagcccgccgacgataaggccgcgcgg
cgccgctccacggtccgtgaaaaggtgagcttcctgtcgggcagctcgagcgagcccgca
gcaccggttgcatcggcgccggagccggttgctccgcctccgcctgcgcctgaacccgga
ccggaagcggcgaccgaaacatcgagcgcaccgcggcgcgccggctggtggtcgcgccgg
ttcggcggcggcgaataa
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