Bradyrhizobium betae: F8237_19960
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Entry
F8237_19960 CDS
T06368
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bbet
Bradyrhizobium betae
Pathway
bbet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8237_19960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbet03019
]
F8237_19960
Enzymes [BR:
bbet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F8237_19960
Messenger RNA biogenesis [BR:
bbet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F8237_19960
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QFI74481
UniProt:
A0A5P6P849
LinkDB
All DBs
Position
complement(4204291..4205832)
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AA seq
513 aa
AA seq
DB search
MERTHLLNSFQDFGLAEPIARALAEEKYVTPTPIQAQTIPTALTGRDVVGIAQTGTGKTA
SFALPILHRLLENRIKPQPKTCRVLVLSPTRELSGQILDSFNAYGRHIRLSSMLAIGGVP
MGRQVRSLMQGVDVLVATPGRLLDLVQSNGLKLSSVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIAELADAMLRDPARVAVTPVSSTVERIQQRIIQVDFSAKPA
FLAQLLKQEPVNRALVFTRTKHGADKVVKTLEKAGIPASAIHGNKSQNHRERTLAQFRSG
DIRTLVATDIAARGIDVDGITHVINFDLPNVPETYVHRIGRTARAGAEGTAISLVAGGEE
LAYLRDIERLIKVALPREDLRTDAGRRDAGPPPAQQRQGRGGRPGQRPQGARSGEGRRND
ERHSDGRHHSASKQGEGRPGEGRRADSRPGNGPKTSKGPRRPHSGGKGHSSQNDRSEQRS
AHSAGASDGIQGVAFLRRESRPTAQPNRKPHSH
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccatcttttgaattcgtttcaggacttcggcctcgccgaacccatcgcc
cgtgctctcgccgaagagaaatacgtcacccccacccccatccaggcccagaccattcct
acggcgttgaccggccgggacgtcgtcggcatcgcccagaccggaaccggcaagaccgcg
tccttcgcgctgccgatcctgcatcgcctgctcgagaaccgcatcaagccgcagcccaag
acctgccgcgtcctggtgctctcaccgacccgcgagctgtccggccagatcctcgacagc
ttcaacgcttatggccgtcacatccgcctgtcctcgatgctcgccatcggcggcgtgccg
atgggccgccaggtccgctccctgatgcagggcgtcgacgtgctggtcgccacgcccggt
cgcctgctcgacctcgtgcagagcaacgggctgaagctttcaagcgtcgaattcctggtg
ctcgacgaagctgaccgtatgctcgacatgggcttcatcaacgacatccgcaaaatcgtc
gccaagctgccgatcaagcggcagacactgttcttctcggccaccatgccgaaggacatc
gccgagctcgccgacgccatgctgcgtgaccccgcccgcgtcgcggtgactccggtctca
tcgaccgtggagcggatccagcagcgcattatccaggtcgacttctccgccaagccggcg
ttcctcgcccagctgctgaagcaggagccggtcaaccgcgcgctggtctttacccgcacc
aagcacggcgccgacaaggtcgtgaagacgctcgagaaggccggcattcccgccagcgcc
atccacggcaacaagtcgcagaaccatcgcgagcgcacgctcgcccagttccgctccggc
gatatccgcaccctggtcgccaccgacatcgccgcccgcggcatcgatgtcgacggcatc
acccacgtcatcaatttcgacctgcccaacgtgcccgagacctatgtgcaccgcatcggc
cgcaccgcacgcgccggcgccgaaggcaccgcgatctctctggtcgcaggcggcgaggag
cttgcctatctccgcgacatcgagcggctgatcaaggtcgcactgccgcgtgaggatctc
cgcaccgacgccggccgccgcgatgcgggtcctcccccggcgcagcaacgacagggccgc
ggaggccgcccgggccagcgtccgcaaggcgcgcggagcggtgaaggacggcgtaacgac
gaacggcattccgacggacgccaccacagcgccagcaagcagggcgaaggacggcccggt
gaaggccggcgcgctgacagcaggcctggcaacggcccgaagacctcgaaggggcctcgt
cgccctcactccggtgggaaggggcattcgtcgcaaaacgaccgttcagaacagcgttcc
gcgcatagcgccggagcatctgatgggatacaaggcgtggcctttttgcgccgtgagagt
cggccgactgcccaaccgaaccgcaaaccccattcgcactag
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