Salisediminibacterium beveridgei: BBEV_3253
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Entry
BBEV_3253 CDS
T05114
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bbev
Salisediminibacterium beveridgei
Pathway
bbev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBEV_3253 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbev03021
]
BBEV_3253 (rpoC)
03400 DNA repair and recombination proteins [BR:
bbev03400
]
BBEV_3253 (rpoC)
Enzymes [BR:
bbev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBEV_3253 (rpoC)
Transcription machinery [BR:
bbev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBEV_3253 (rpoC)
DNA repair and recombination proteins [BR:
bbev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBEV_3253 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
AOM84568
UniProt:
A0A1D7QZZ0
LinkDB
All DBs
Position
complement(3451787..3455392)
Genome browser
AA seq
1201 aa
AA seq
DB search
MIDVNNFEYMKIGLASSDKIRSWSRGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRSLEEVIYFASYVVTDPGDTPLELKQLLSEKEYRAYYDKYGRSFKATMGAEAIRKLLE
DIDLDKEANMLKEELETAQGQRRTRAIKRLEVIEAFRHSENDPSWMVLDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDAMIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLQMYQCGLPKE
MALELFKPFVMKELVSKGLSHNIKSAKRKVERVQPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAESRLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREDAMGEGSTFTTPDEVLAAYQQGYVHLHTRIALP
VEAINKTNFPDEVKQHYLLTSVGKVIFNEILPHSFPYINEPTAVNLEEVTPKKYFVPYGT
DIKKEFKNRDLVEPFKKGFLGDIIAEVFKKFKISETSVMLDKMKELGFYYSTKAGITIGV
SDIVVLKDKQDILDDAEEKVSRVTKQFRRGLITEEERYDKVIEIWSNAKDMIQTKLLGTL
VKTNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIIRADDCGTDRGLDVKAIKEGNEVIESLY
DRLVGRVSFQRIFHPETGELLVDRNQDINEDMAKIIEDAGIEKVTIRSVFTCDTQHGACK
KCYGRNLATGTKVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEVF
EARNPKGQALISEIDGTVIEIKDQNDKKEIIVQGPVETRNYNTMYGARLKVKEGDEVRSG
QEMTEGSIDPKELLQVSGVQGVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMMRKVRVI
DAGDTDILPGSLVEIHQYSDANREILLKGGRPATGRPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDQLVGLKENVIIGKLVPAGTGMQQYRQLKPVSTEDNSDIIQQPTVA
D
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtgaataattttgaatatatgaaaatcggtctcgcttcatctgataagatc
cgctcctggtcaagaggagaggtgaagaagcctgaaacgattaactatcgaacgttaaag
ccggaaaaagacggtttgttctgcgagcgcattttcggtcctaccaaggactgggaatgc
cactgcggaaaatacaagcgcgtccgatataaaggcgtagtctgtgatcgttgtggtgtt
gaagtcacgcgctccaaagtccgacgtgaacgcatgggtcacattgaactcgcagcaccg
gtatcccatatctggtacttcaaagggatcccgagccgcatgggcctcgtactggatatg
tctccacgttcgcttgaagaagtcatttacttcgcctcctatgtggtcaccgatccaggt
gatacacctctggagctgaagcagctgctgtccgagaaagaataccgggcgtactacgat
aagtatggccgctctttcaaagcaacgatgggtgcagaagcgatccggaagttactggaa
gacattgacctggataaagaagcaaacatgctgaaagaagaacttgaaaccgcacagggt
caacgaagaacccgtgcgatcaagcgtctggaagtcattgaagcattccgtcattcagaa
aatgatccatcctggatggttctcgacgttctcccggtgatcccaccggaaattcgtccg
atggttcagcttgatggtggccgttttgccacttctgacctgaacgatctgtaccgccgg
gtgatcaaccgtaacaaccgtctgaagcgtcttttggatcttggtgcaccaagcattatc
gtgcaaaacgaaaagcggatgctccaggaagcggtcgatgcaatgatcgataacggccgt
cgcggacgaccggttaccggaccaggtaaccgtccgttaaaatccctctcacacatgctg
aaagggaagcagggacgattccgtcagaacctgctcggtaaacgtgtggactattcaggc
cgttcggttattgtcgtcggcccgaacctgcagatgtaccagtgcggactgccgaaggaa
atggcgcttgaactgttcaaaccattcgttatgaaagaactggtcagtaaaggcctctct
cataacatcaagagtgcaaaacgtaaagttgagcgcgtgcagccggaagtatgggatgtc
cttgaagaagtcatccgggaacacccggtgctcttaaaccgtgcaccaacgcttcaccgc
cttggtatccaggcgttcgaaccgatcctggtcgaaggccgtgccatcaagctgcatccg
ctggtttgtacagcgtacaatgcggactttgacggtgaccagatggcggtacacgtaccg
ctttctgccgaagcgcaagccgagtcacggctattgatgctcgcggcacagaacattttg
aatccgaaggacggcaagccggtcgttacaccttcccaggacatggtactcggtaactat
tacctcacgcttgagcgtgaagatgccatgggcgaagggagtaccttcaccacaccggat
gaagtgctcgccgcctaccagcaaggttatgtgcatctgcacacccgcattgccctgcct
gtggaagccatcaacaaaacgaatttccctgatgaggtcaaacaacattacctcctcaca
tcagtcggaaaggtcattttcaatgaaattctgccgcactcattcccttatattaatgag
ccgacggctgtaaaccttgaagaagtgacgccgaagaagtatttcgtaccttatggtaca
gatataaagaaagagtttaagaaccgggatctcgttgaaccgttcaaaaaaggcttcctg
ggtgacatcattgccgaagtctttaagaaattcaagatctctgaaacgtccgtcatgctc
gataaaatgaaagagctcggtttctattattcaacgaaagccggtatcaccatcggtgta
tccgacatcgttgtgttgaaggataagcaggatatccttgacgacgcggaagagaaagtc
tctcgtgtaacaaagcagttccgtcgcggtctcatcacggaagaagagcgttatgacaaa
gtcattgaaatctggagtaatgccaaagatatgattcagacgaagcttttgggtacgctt
gtcaaaacgaacccgatctttatgatgagtgattccggcgcacgtggtaacgcgtcgaac
ttcacgcagctcgcgggtatgcgtggtctgatggcaaatccatccggacgaatcatcgag
ctgccgatcaagtccagtttccgtgaaggtctgacggtacttgaatacttcatctccacg
cacggtgcacgtaaaggtcttgcggatacagccttgaagacggctgactcaggttacctg
acgcgtcgtctggtggatgtggcgcaagatgtaatcatccgcgctgacgactgcggaact
gaccgtggactcgatgtgaaggctatcaaagaaggaaatgaagtgatcgagagtctctat
gaccgcctcgttggccgggtttccttccagcgtatcttccacccggaaaccggagagctt
cttgtcgaccggaaccaggacattaacgaagatatggccaaaatcatcgaagacgccggt
attgaaaaagtaacgatccgctccgtgttcacatgtgatacacaacacggtgcctgcaag
aaatgttacggacgtaacctggcaacaggcacaaaagtggaagtgggcgaagcagtaggc
attatcgcagcccagtccatcggtgagccgggtacacagcttacaatgcgtacgttccac
acaggcggggttgccggtgacgatatcacgcagggtcttccacgtattcaggaagtgttt
gaagcccgtaatccgaaagggcaggcactcatttccgaaatcgatggaacggtcattgaa
atcaaagatcaaaatgataaaaaagaaatcattgtacaaggtcctgtggaaacacggaac
tacaacacaatgtacggcgcacgcctgaaagtcaaagaaggagatgaagtccgctccggt
caggaaatgacggaaggttccatcgatccgaaggaactgctccaggtttccggtgtccag
ggcgttcaagaatacctcctgcgggaagtgcagaaagtataccgtatgcaaggtgttgaa
atcggagataagcacgtagaagtcatggttcgtcagatgatgcgtaaagtccgcgtcatc
gatgccggtgatacggatatcctcccaggttccctggtggaaatccatcaatacagcgat
gccaacagagagattctcttaaaaggcggacgccctgccacaggacgaccggtccttctc
gggattaccaaagcatcgcttgaaactgactccttcctgtccgcagcgtccttccaggag
acaactcgtgtcctgaccgatgccgcgatcaaaggcaagcgcgatcagctcgtcggactc
aaggagaacgtcattatcggtaagctggttccagcaggtacaggcatgcaacaatatcgc
caactgaaacctgtcagcacagaagacaacagtgacatcattcaacaaccaaccgttgca
gattaa
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integrated database retrieval system
