Bifidobacterium bifidum BGN4: BBB_0414
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Entry
BBB_0414 CDS
T02135
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBB_0414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_0414
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBB_0414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
Anti-Pycsar_Apyc1
Cuticle_1
Motif
Other DBs
NCBI-ProteinID:
AFL04009
UniProt:
I3WGJ6
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All DBs
Position
510188..512029
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AA seq
613 aa
AA seq
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MAQEQQKKNNSRRSRSGGASRRRGSANRNTSNAGSFKGQATAPQQDDVLIAPPKYRKGSM
RITPLGGLGEIGRNMNVIEYNGHLLLIDCGVLFPEEEQPGVDLILPDFSYIKNRLDKVDA
LVLTHGHEDHIGGVPYLLKLRPDIPLIGSKLTLAFVEAKCQEHNQHPTMVEVKGRDKLKV
GPFNLEFVTVTHSIPDALAVYVKTPAGSLIDTGDIKLDQLPLDHKITDLVEFGKIGEQGV
DLLMMDSTNAEVPGFVKPETSIGPALDQAFAQASRKIIVASFSSHVHRVQQVVDVAHKYG
RKVVFVGRSMVRNMSIAADLGYLHIPEGTVIDLKKAHDVQDDKLVFMCTGSQGEPMAALG
RIADGNHRDITINEFDTVILASSLIPGNEHGVYKVINKLVQLGARVVNRDNAAVHVSGHC
NEGELLYMYNIVKPKCAMPIHGENRHLVANGLIAVKTGVDPKNVVLAEDGDVVDLYHGQA
AVVGSVPCGYVYVDGDSVGEITDEELEKRRILGTEGFVSSFVVVDTEASEVVTGPKIFLN
AVAEDESEFDKIRHQIVEQLQDAMMQGTKDTHRLQQIMRRTLGGWIARQLHRKPMIVPVV
ADIAQDIIEEPSK
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagaacaacaaaagaagaacaattcccgcaggtcccgttccggtggcgcgtcg
cgccgccgcggatccgcgaatcgcaacaccagcaacgccggctcgttcaagggccaggcc
accgctccccagcaggacgacgtcctgatcgccccgccgaagtaccgcaagggttcgatg
cgcatcacgccgctcggcggtctgggcgaaatcggccgcaacatgaacgtaatcgaatac
aacggtcacctgctgctcatcgactgcggcgtgctctttcccgaagaggagcagccgggc
gtcgacctgattcttcccgatttcagctacatcaagaaccgtctcgacaaggtcgacgcg
ctcgtgctcactcatggccatgaggaccatatcggcggcgtgccctacctgctcaagctg
cgcccggacatcccgctgatcggctccaagctgaccctcgccttcgttgaggcgaaatgc
caggagcacaaccagcatcccaccatggtggaggtcaagggacgcgacaagctcaaggtc
ggcccgttcaacctcgaattcgtcaccgtcacccactcgatccccgacgcgctcgccgtg
tacgtcaagacgcccgccggctccctgattgacaccggcgacatcaagctcgaccagctg
ccgctcgaccacaagatcaccgatctggtggaattcggcaagatcggcgagcagggcgtg
gatctgctgatgatggactccaccaacgccgaggtgccaggcttcgtcaagccggagacc
tccatcggacccgcgctcgaccaggcgttcgcgcaggcgagccgcaagatcatcgtcgcc
agcttctcctcgcacgtgcaccgcgtccagcaggtcgtcgacgtcgcccacaagtatggg
cgcaaggtcgtcttcgtaggccgctcgatggtgcgcaacatgtccatcgccgccgacctc
ggctacctgcacatccccgaaggcaccgtcatcgacctcaagaaggcgcacgacgtgcag
gacgacaagctcgtcttcatgtgcaccggttcgcagggtgagccgatggccgccctcgga
cgcatcgccgacggcaaccaccgcgacatcaccatcaacgagttcgacacggtgatactc
gccagctccctgattccgggcaacgagcacggcgtgtacaaggtcatcaacaagctcgtg
cagctcggcgcgcgcgtcgtcaaccgcgacaacgcggccgtgcacgtgtccggtcactgc
aacgagggcgagctgctgtacatgtacaacatcgtcaagcccaagtgcgcgatgcccatc
cacggcgagaaccgccacttggtcgccaacggcctgatcgccgtcaagaccggcgtcgat
ccgaagaacgtggtgctggcggaggatggcgacgtcgtcgacctgtaccacggtcaggcc
gcggtcgtcggctccgtgccgtgcggctacgtgtacgtggacggcgattcggtcggcgag
atcaccgacgaggagcttgagaagcgccgcatcctcggcaccgaaggcttcgtgtccagc
ttcgtcgtggtcgataccgaggcctccgaagtcgtcaccggcccgaagatcttcctcaac
gcggtcgccgaagacgaaagcgagttcgacaagatccgccatcagatcgtcgagcagctg
caggacgcgatgatgcaggggacgaaggacacgcacagactgcagcagatcatgcgccgc
acgctcggcggatggatcgcccgacagctgcaccgcaagccgatgatcgttccggtcgtc
gccgacatcgcccaggacatcatcgaagaacccagcaagtaa
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