Bifidobacterium bifidum BGN4: BBB_0515
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Entry
BBB_0515 CDS
T02135
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
bbf
Bifidobacterium bifidum BGN4
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_0515 (hrpA)
Enzymes [BR:
bbf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBB_0515 (hrpA)
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBB_0515 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
AAA_19
AAA_22
SLFN-g3_helicase
AAA_16
HA2_C
T2SSE
nSTAND3
AAA_30
NACHT
AAA_11
Zeta_toxin
ResIII
Cas3-like_C_2
SRP54
Motif
Other DBs
NCBI-ProteinID:
AFL04109
UniProt:
I3WGU6
LinkDB
All DBs
Position
complement(636056..640144)
Genome browser
AA seq
1362 aa
AA seq
DB search
MKFTYPSELPVSAARDDIAKAVSSSQVVIVSGQTGSGKTTQLPKILLELGRGTHGRQIVH
TQPRRLAARTVAERIASEMGVHLGDEIGYQVRFTDETSPKTRLRVVTDGILLAQIQRDPQ
LRQYDTIVIDEAHERSLNIDFLLGYLTALLPKRRDLKLIITSATIDSVKFQEHFEHALHE
KVPVIEVSGRTYPVQVVYEPLGTAPALMRHVPGFETGAMPGEESYAELSAAPSDGGRDRG
SSREPDMDMPTAVARACAELIIHSSHERGARDILVFASGERDIHEFENALRRHYGPRADD
MRHPDAIEIMPLFARLSSKEQHRVFEPHTHQRIVIATNVAETSLTVPGIRYVVDPGTARI
SRYSKTAKVQRLPIEPISQASADQRSGRCGRIADGIAIRLYSREDYENRPRFTEPEILRT
SLGAVVLHMLSVGVARTAEDVTNFGFIDPPDMKAVSDGFNELTELKAIGRKRGEVTLTHV
GRQLARIPIDVRLGRMVIEAAKSSTPDTLAAVLVIVAFLSLQDPRERPDEARDEADRIHN
RYADPSSDYLTALNIWDRIFQADGEPSNNALRRICKSEYFSWLRVRQWKDLVNQLTEMCR
ELKFKVGSPQPASRPDLAVRQLPINQQAAHSLCCSWDDRGIHTSMLSGLLSMMGMQIVRE
PKASDFAGLKGAAKAKAIKRAQKMAKNDYQGARGTHFALFPASAVAKSTPQWVMSTELVE
TSRLWARYSAAINPAWAEPLAGQLTRTTYAEPHWSGSRGSAVATAKVLLYGLPIIADRTV
QWGRINPMEARDFLIRQGLVEGDVQQRFSYDDFLARNRDILDEAAEDASRTRQVSQSVSD
EDLYDFYQSVIPNDVTCVADLAKWWKREHGEHPHLLDFDPDKVERLSSAESVSLADYPDH
WHALGTDGQPIDLRLSYIYDPHDPADGVTVHVPLKALSRLTPEQFTWNVPGLLDELIVGL
IKSLPKSLRVQFVPAPDTARKIRAWIDDRYPALPGTGTSDGQGHAWPDLPHVFTQAAIDT
VDAQIHPEVLTGELWEKLPAYLRMTFSIEQQLPAPRNARGRRHARGPVKVLGSGKSLTAL
QRQFAEQAEASARRMVEHKAEQAASQGKLVEQANLLHKAGATSESRAVMLWRGALDALRM
PSERISSRWLGAEALMLASAPYPSTKALVEDLQLATVKRLLPNIDTLPDDDALADAVMGM
TEVYEDTVYALAHDVIAILRAYANVDKATSGKADLPMLSVLQSVREHIATLVFPGFIGAT
PPAALPRIPKYLEADLIRLTKAKNDKNRDVRWAWEADEARQLVDKAVQRAKTEPAGPRHE
ALTKQADDARWMLEEFYVSLWAQELGTAKPVSLQRIKKTLGK
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacatatccttccgagctgccggtctcggcggctcgcgatgacatcgccaag
gcggtgtcatcaagccaggtcgtcatcgtctcgggccagaccggttcgggcaagaccacg
cagctgccgaagatcctgctggagctcggccgcggtacgcacggccggcagattgtacac
acgcagccgcgcaggctcgccgcgcgaaccgtcgccgaacgcatcgcctccgaaatgggc
gtccatctgggcgacgagatcggctatcaggtgcggttcaccgacgagacgtcgccgaag
acccggctgcgcgtcgtcaccgacggcatcctgctggcgcagatccagcgcgacccccag
ctgcggcaatacgacacgatcgtcatcgacgaggcgcatgagcgcagcctgaacatcgac
ttcctgctcggatacctcaccgcgctgctgccgaaacgtcgcgacctgaagctgatcatc
acctcggcgaccatcgattcggtgaagtttcaggagcatttcgagcatgcgctgcacgag
aaggttccagtcatcgaggtctccggtcgcacctaccccgtgcaggtcgtctacgagccg
ctgggcaccgcgcccgcgctgatgcggcacgtgcccggattcgagaccggcgcgatgccc
ggcgaggaatcgtatgccgaactgtcggcggcgccctccgacggcggccgggaccgtggc
tcatctcgcgaacccgacatggacatgcccacggcggtcgccagggcgtgcgcggagctc
atcatccattccagccatgagcgcggcgcccgcgacatcctcgtgttcgcctccggcgag
cgcgacatccacgagttcgagaacgcgctgcgccgccattacggcccgcgcgccgacgac
atgcgccaccccgatgccatcgagatcatgccgctgttcgcccgcctgtcgtccaaggag
cagcaccgcgtcttcgagccgcacacgcaccagcgcatcgtcatcgccacgaacgtggcc
gaaacgtcactgaccgtgccgggcatccgctacgtggtcgacccgggcacggcccgcatc
agccggtattcgaagaccgccaaggtgcagcggctgcccatcgagccgatcagccaggcg
agcgccgaccagcggtccggccggtgcggccgtatcgcggacggcatcgccatccgcctg
tattcgcgtgaggactacgagaaccgtcctcggttcaccgagccggagatcctgcgcaca
tcgctgggtgccgtggtgctgcacatgctgtcggtgggcgtcgcccgtacagccgaggat
gtgacgaatttcgggttcatcgacccgccggacatgaaggcggtctccgacggcttcaac
gagctgacggagctcaaggcgatcggccgcaagcgcggcgaggtgacgctgacgcatgtc
ggacggcagctcgcccgcatccccatcgatgtccgtctcggccgcatggtgatcgaggcc
gcgaaatccagcacgcccgacacgttggctgccgtgctggtgatcgtggcgttcctgagc
cttcaggatccgcgtgaacgcccggacgaggcccgggatgaggccgaccgcatccacaac
cggtatgcggacccgtccagcgactatctgaccgcgctgaacatctgggaccgtatcttc
caggccgatggcgagccgagcaacaatgcgctgcgccgtatctgcaagagcgagtatttc
agctggctgcgcgtacgccagtggaaggacctggtcaatcagctgacggagatgtgccgc
gaactcaagttcaaggtcggctccccgcagccggcctcccgccccgatctggcggtacgc
cagctgccgatcaaccagcaggctgcccattcgctgtgctgctcgtgggacgaccgcggc
attcacacgtcgatgctctccggcctgctgtcgatgatgggcatgcagatcgtgcgcgaa
ccgaaggcctccgatttcgccggtctcaagggcgcggcgaaggccaaggccatcaagcgg
gctcagaagatggcgaagaacgactatcagggcgcgcgaggcactcatttcgcattgttc
ccggcctcggccgtggccaaatccaccccgcagtgggtgatgagcacggaactggtggag
acgagccgcctgtgggcgaggtacagcgccgccatcaacccggcgtgggccgagccgctg
gccgggcagctgacccgcaccacgtatgcggagccgcactggtctggttcgcgcggctcc
gccgtcgccacggcgaaggtgctgctgtacggtctgccgatcatcgcggaccgcaccgtg
caatggggacgcatcaaccccatggaggcccgcgacttcctgatccggcagggccttgtc
gagggggacgtccagcagcggttcagctatgacgattttttggcccgaaaccgcgacatc
ctggacgaggcggccgaggacgccagtcgcaccaggcaggtctcgcagtccgtcagcgac
gaggacctctacgacttctaccagtcggtcatccccaatgacgtgacctgcgtcgccgac
ctggcgaaatggtggaagcgcgagcacggcgaacacccgcatctgctcgatttcgacccg
gacaaggtcgaacgcctgtcatcggcggagtcggtgagcctcgccgactatccggaccat
tggcatgcgctcggcacggacggccagccgatcgacctgcggctcagctacatctacgac
ccgcacgaccccgccgacggcgtgaccgtgcacgtgccgctcaaggcgctgtcccgtctg
acaccggaacagttcacatggaacgttcccggactgctcgacgagctgatcgtggggctg
atcaagtccctgccgaaatcactgcgcgtgcagttcgtgcccgcaccggacaccgcgcgc
aagatccgcgcatggatagacgaccggtatccggccctgcccggcaccggcacatccgac
ggccagggccacgcatggcccgacctgccgcacgtgttcacccaggcggcgatcgacacc
gtggacgctcagatccacccggaggtgctgaccggcgaactatgggagaagctgcccgcc
tacctgcggatgacgttctccatcgagcagcaactccccgcgccgcgcaacgcacgcgga
cggcggcatgcacgcggcccggtgaaggtactgggttctggcaaatccctgaccgcgttg
caacggcagttcgccgaacaggcggaggcatccgcccggcgcatggtcgaacacaaggcg
gaacaggccgccagccagggcaaactggtcgaacaggccaacctgctgcacaaggccggg
gcgacgagcgagtcgcgcgcggtgatgctgtggcggggcgccctggacgcgctgcgcatg
ccttcggagcgtatctcgtctcggtggctcggcgccgaggcgctgatgctcgcgtcggcg
ccatacccctccaccaaggcgctggtggaggacctgcagctggccaccgtcaaacgtctg
ctgccgaacatcgacacgctccccgacgacgatgcgctcgccgatgcggtgatggggatg
accgaggtctacgaggacaccgtctacgccctcgcccatgatgtcatcgccatcctgcgc
gcgtacgcgaatgtcgacaaggcgacctccggcaaggccgacctgccgatgctgtcggtg
ctgcaatcggtgcgcgagcatatcgccacactggtgttccccgggttcatcggcgcgacg
ccgcccgccgccctgccgcgcataccgaagtatctggaggccgacctgatccgtctcacc
aaggcgaagaacgacaagaaccgcgacgtgcgatgggcctgggaggccgacgaggcgcga
cagctggtcgacaaggccgttcagcgtgccaagacggagcccgcgggcccacgccatgag
gcactgacgaaacaggccgacgacgcgcgctggatgctggaggagttctacgtctctctg
tgggcccaggagcttggcaccgcgaagccggtcagcttgcagcgaatcaagaaaacgctc
ggcaaatag
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integrated database retrieval system
