Bifidobacterium bifidum BGN4: BBB_0907
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Entry
BBB_0907 CDS
T02135
Symbol
helY
Name
(GenBank) putative helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
bbf
Bifidobacterium bifidum BGN4
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_0907 (helY)
Enzymes [BR:
bbf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BBB_0907 (helY)
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BBB_0907 (helY)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
DEXQc_Suv3
AAA_22
nSTAND3
AAA_16
MTR4-like_stalk
Motif
Other DBs
NCBI-ProteinID:
AFL04499
UniProt:
I3WHY6
LinkDB
All DBs
Position
1098484..1101111
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AA seq
875 aa
AA seq
DB search
MVKHQRNHSAADRPGPSPSQRYAAFQKRQAHNASVAARFAATLPFDLDDFQQDAIDALER
GENVLVAAPTGAGKTVVADFAMYLARERNVKAFYTTPIKALSNQKYHDLTAVYGADRVGL
LTGDISINSEADIVVMTTEVLRNMLYEHSTMLNALRFVILDEVHYLADRFRGPVWEEVII
HLPRQVSVIGLSATVSNVEDFSSWISSVRGDTKLVVSERRPVPLEQHVLVQADDHTEPEL
LDLYRRDAQGEQTTKLNARLIDRLDQLDRQAARRRGTENSRSRGRGHSRGHVPAQRHTPK
RWAVVDELNYLDMLPGIYFIFSRNGCDQAVEQCINAGLELTTEDEMRRIRAIVDEMVAGQ
LSQEDLKALQFSRFRFALEEGFASHHAGMVALFRQIVERLFEEGLVKMVFATETLALGIN
MPARCVIVEKLEKFNGSGHVPLTPGEFTQLTGRAGRRGIDTIGHAIVVDHRDFVPATAAA
LSSKRVYPLHSSFHATFNMAVNLLNTSDYETTRATLDHSFAQWEANESAWQLESQLTTLK
QALDGYEQAFHCEYGDFASLMRIRMELSDLEKNGRRKLKQTAFPTDEQRKNTFRELDQSI
ETLKKRDREHPCRQCPDMQQHMKWGHRWIREMREYERVQHRYESRTGSVARQFDRICSIL
EQLGYVKRDGTDMRLSEQGQLLRHIYSEQDIVLAEALERGMFDHLTARQLAAVLSALVFE
ARGGTGGEPRRWPGGIQGPVAQTSQSLDRLHAQLTMLCEDEGLDDLQQLDFGIVDIMYDW
ASGNSLAYVLHDRDMTGGDFVRNAKRLSDILQQISAAEPYLPQGSAHLAQVAHEAMELVN
RGIVAYSGIGEGCRNRRRRQGRTGTGNIRLVRTVL
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaacatcagcgcaatcattcggcggcggatcgacccggcccatcgccttcccag
cggtatgccgcattccagaagcgtcaggcgcataacgcgagcgtcgccgcgcgtttcgca
gccacgctgccgttcgacctggacgatttccagcaggacgcgatagacgcgttggagcgg
ggggagaacgtgctcgtcgcggccccgacgggcgccggcaagaccgtggtggccgacttc
gcgatgtatctggcccgcgagcgcaatgtcaaggcgttctacaccacgccgatcaaggcg
ttgagcaaccagaagtaccatgacctgaccgccgtttacggtgccgaccgcgtcgggctg
ctgacgggcgacatctcgatcaactccgaggccgacatcgtcgtcatgacgaccgaggta
ctgcgcaacatgctctacgagcattcgaccatgctcaacgcgctgcggttcgtcatactc
gacgaggtccattacctcgccgaccggttccgcggcccggtctgggaggaggtcatcatc
catcttccccggcaggtcagcgtcatcggattgtccgccacggtctccaatgtcgaggat
ttctcgtcctggatatcctccgtccgcggcgacactaagctggtggtctccgagcgccgt
cccgtcccgctggagcagcatgtgctcgtgcaggccgacgaccacaccgagccggagctg
ctcgacctgtaccggcgtgacgcccagggcgagcagaccaccaagctcaacgcgcgcctg
atcgaccggctcgatcagcttgaccgtcaggcggcgcgccgccgcggcaccgagaactca
cgctcccgcggccgcggccattcgcggggccacgtgccggcgcagcgccacacgcccaag
cgctgggcggtggtcgacgagctcaactatctcgacatgcttcccggcatctatttcata
ttctcgcgcaacggctgcgatcaggccgtcgagcagtgcatcaatgcggggctggaactc
accaccgaggacgagatgcggcgcatccgcgccatcgtcgacgagatggtcgccgggcag
ttgagccaggaggatctcaaggcgttgcagttctcccggttcaggttcgcgctggaggag
ggcttcgcgtcccatcatgccggcatggtcgcgctgttccggcagatagtcgaacgcctg
tttgaagagggactggtgaagatggtcttcgcgacggagacgctcgcgctgggcatcaac
atgcctgcgcgctgcgtcatcgtcgaaaagctggagaagttcaacggcagcgggcatgtg
ccgctgacaccgggggagttcacccagctgaccggccgcgccggccgtcgcggcatcgat
acgatcggacacgcgatcgtcgtcgaccatcgcgatttcgtacctgcgaccgccgccgca
ttgtccagcaagcgcgtctacccgctgcattcgagcttccatgccacgttcaacatggcc
gtcaatctgctcaacaccagcgactacgagacgactcgcgccacgctggaccattccttc
gcccagtgggaggccaacgagtcggcctggcagctcgaatcgcaactgaccacgctgaaa
caggcgttggacggctatgagcaggcattccactgcgagtacggggatttcgcgtctctg
atgcgcatccgcatggagctgtccgacctggagaagaacggccggcgcaagctcaagcag
accgccttcccgaccgacgagcagcgcaagaacacgttccgcgagctggaccagtccatc
gagaccctgaagaagcgcgaccgcgaacatccgtgccggcagtgccccgacatgcagcag
catatgaaatggggccatcgctggattcgcgagatgcgcgaatacgagcgggtgcagcac
aggtacgagtcgcgcaccgggtccgtggcccggcagttcgaccgtatctgctccatcctg
gaacagctgggatacgtgaagcgcgacgggacggacatgcgattgagcgagcaggggcaa
ctgctgcgccacatctacagcgagcaggacatcgtgctcgccgaagcgctggaacgcggc
atgttcgaccatctgacggcgcgacagctcgccgcggtgctctccgccctggtgttcgaa
gccaggggaggcaccgggggagaaccgaggcgctggcccggcggcatccaaggcccggtc
gcccagacttcgcaatctttggaccgtctgcatgcgcagctcacgatgctgtgcgaggat
gaggggcttgacgacctgcagcaactcgacttcggcatcgtcgacatcatgtacgactgg
gccagcggcaacagtctggcatatgtgctgcatgaccgggacatgaccggcggcgatttc
gtgcgcaacgcgaagcgtctgtccgacatcctccagcagatctcggcggcagagccgtat
ctgccgcaggggagcgcgcacctcgcccaggtcgcgcacgaggccatggaactggtcaac
cgcggcatcgtcgcctattcgggcatcggcgagggctgccggaatcgtcgcagacggcaa
ggcaggaccggaacggggaatatacgactcgtccgaactgttttgtag
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