Bifidobacterium bifidum BGN4: BBB_0968
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Entry
BBB_0968 CDS
T02135
Symbol
uvrA
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBB_0968 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbf03400
]
BBB_0968 (uvrA)
DNA repair and recombination proteins [BR:
bbf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BBB_0968 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBB_0968 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
AAA_16
nSTAND1
AAA_21
RsgA_GTPase
AAA_23
AAA_33
nSTAND3
AAA_22
APS_kinase
DnaJ_CXXCXGXG
NACHT
AAA_24
T2SSE
Viral_helicase1
cobW
FtsK_SpoIIIE
Mtrc-MtrF_II-IV_dom
Cytochrom_c3_2
Septin
Cytochrome_C7
Motif
Other DBs
NCBI-ProteinID:
AFL04560
UniProt:
I3WI47
LinkDB
All DBs
Position
complement(1164808..1167798)
Genome browser
AA seq
996 aa
AA seq
DB search
MTGRKTSKSGGGDVVIERVMSSDTFLSREIRKAPMRKTDSSLVADISHIPNDLKITIQGA
REHNLKNVDLAVPRNRMVVFTGLSGSGKSSLAFDTLFAEGQRRYVESLSAYARQFLGQMD
KPDVDFIEGLSPAVSIDQKTTNRNPRSTVGTITEIYDYLRLLFARTGVPHCPECGELVSA
QTPQQMVDTLLKNPERTRFQILAPVVRGRKGEFADLLELLRGDGYARALIDGEERQLSDD
IKLTKQKKHTIEVVVDRLMIRDGIRQRLTDSIETALRLSKGVIVADFVDLDEKDPNRRQP
FSEHRACPNGHQLQLDEIEPRTFSFNAPYGACPVCDGIGYKLEIDPDLVIADDSKSLSDG
VIEPWGGGRTTTEYYGHVLQGLADELGFSMDTPWRDLPEDVRHSILYGHDFKVNVSYRNR
WGRLREYSTGFEGVVRTLMRRYHETDSDQMKQYYESYMREVPCQACNGRRLRPEVLAVTV
DGESIADVCDMPVERGLAWINGLKLEGAAATIAGEVVKEIRARLGFLNDVGLNYLTLSRA
AKTLSGGEAQRIRLATQIGSGLVGVMYVLDEPSIGLHQRDNARLIETLHHLRDLGNTLIV
VEHDQETIERADWVVDIGPGAGEHGGEVIYSGPAKRLIEAPRSVTGDYIAGRRSIEVPAV
RRKPHATKRLRVVGARENNLKNITVDFPLGVMTVVTGVSGSGKSTLVNTILYPVLADKLN
GARIVPGKHTRVEGLDQCDKVIHVDQNPIGRTPRSNPATYTGVWDKIRTLFAKTPEAQVR
GYGPGRFSFNVKGGRCEACHGDGTLKIEMNFLPDVYVECEECHGKRYNRETLEVKYNGKT
VADVLDMPIEEAATFFKAYPSISRYLDTLVQVGLGYIRLGQPAPTLSGGESQRVKLATEL
QRRSTGKTVYILDEPTTGLHFEDVRKLLLVLQGLVDKGNTVIVIEHNLDVVKSADWIIDL
GPEGGDGGGTIVTQGTPEQVAQCEASWTGKFLKDML
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
gtgactggacgcaagacgtcgaaatcgggcggcggggacgtcgtgatcgaacgtgtgatg
agcagcgacacattcctgtcgcgcgagatccgcaaggcgccgatgcgcaagaccgactcc
tcattggtggcggacatctcacatatcccgaacgatctgaagatcaccatccagggtgcg
cgggaacacaatctgaagaacgtggatctcgccgtgccgcgcaacaggatggtcgtgttc
accggactgtctggctccggcaagtcatcgctcgcgttcgatacgctgttcgcggagggg
cagcgccggtatgtggagtcgttgtccgcgtatgcgcgtcagttcctcgggcaaatggac
aagccggatgtggatttcatcgagggattgagccctgcggtgtcgatcgaccagaagacc
acaaaccgcaatccgcgttcgaccgtgggcacgatcaccgagatttatgactatctgcga
ctgctgttcgcccgcacaggcgtaccgcattgccccgaatgcggcgagctggtcagcgcg
cagacccctcagcagatggtggacacgctgctgaagaacccggaacgcacgagattccag
attctcgcgcccgttgtacgcggccgcaagggggagttcgccgatcttctggagctgctg
cgcggcgacggctatgcccgcgcgctgatcgacggtgaggagcgccagctgtccgacgac
atcaagctcaccaagcagaaaaagcacaccatcgaggtcgtggtggatcgtctgatgatc
cgcgacggcatccgacagcggcttactgattcgatcgagaccgcgctgcggctgtccaaa
ggtgtcatcgtcgccgatttcgtggacttggacgagaaggacccgaatcggcgtcagccg
ttctcggagcacagggcctgtccgaacgggcatcagctgcagttggacgagatcgagccc
cgcacgttctcgttcaatgcgccatacggggcctgtcctgtgtgcgatggcatcggctac
aagctggagatcgaccccgatctggtcatcgccgatgattccaagtcgctgtccgacggc
gtgatcgagccgtggggaggcggcaggaccacgaccgaatactacgggcatgtgctgcag
ggcctggccgacgaactcgggttctccatggacaccccatggcgtgatttgcctgaggac
gtgcggcattcgatcctgtacgggcatgatttcaaggtcaacgtctcatatcgcaaccgg
tgggggcggctgcgcgagtattcgaccggattcgagggtgtcgtgcgcacgctgatgcgc
cggtatcacgagaccgactcggaccagatgaagcagtactacgagtcgtacatgcgcgag
gttccctgccaggcgtgcaatggcaggaggctgcgccccgaagtgttggcggtcaccgta
gacggcgaatccatcgccgatgtatgcgacatgcccgtcgaacgcgggctagcgtggatc
aatgggctgaaactggagggagcggcggcgacgatcgccggcgaagtggtcaaggagatc
cgggcccggctgggattcctcaacgatgtcggcctgaactacctgacgttgtcgcgcgcg
gccaagacgctgtccggcggcgaggcccagcgcatcaggcttgccacgcagatcggctcc
ggactggtcggcgtcatgtacgtgctcgacgagccatcgatcggactgcaccagcgtgac
aacgcgcgtctcatcgagacgctgcaccatctgcgcgacctcggcaacacgctgattgtc
gtcgaacacgaccaggaaaccatcgagagggcggattgggtggtcgacatcggccccggt
gccggcgagcacggcggcgaggtgatttactccggtccggcgaagcgcctcatcgaggcg
ccccggtccgtcaccggcgattacatcgccggccgacggagcatcgaagtgccggccgtg
cggcgcaagccgcatgccacgaagcgccttcgcgtggtgggggcaagggagaacaatctg
aagaacatcaccgtcgatttcccccttggcgtgatgactgtggtcaccggcgtctccggc
tccggcaaatcgaccctggtgaacacgatcctctacccggtgctcgccgacaagctcaac
ggcgcgcgcatcgtgccgggcaagcacacgcgcgtcgagggccttgaccagtgcgacaag
gtcatccacgtcgaccagaatccgatcgggcgcactccgcgctcgaacccggccacatac
accggcgtgtgggacaagatccgcacgctgttcgctaagacgccggaggcgcaggtgcgc
ggttacggcccggggcggttctcgttcaacgtcaagggcggccgctgcgaggcgtgccac
ggcgacggcacgctcaagatcgagatgaacttcctgcccgacgtgtacgtcgaatgcgag
gaatgccacggcaagcggtacaaccgcgaaaccctggaggtcaaatacaacggcaagacc
gtcgccgacgtgcttgatatgccgatcgaggaggccgccacgttcttcaaggcgtacccg
tcgatctcccgctacctcgacacgcttgtgcaggtcggactggggtatattcgcctcggg
cagcccgcgcccacgctgtctggcggagagtcgcaacgcgtcaagctcgccaccgagctg
cagcgcaggtccaccggcaagacagtgtatatcctcgacgaaccgaccacgggcctgcac
ttcgaggacgtgcgcaaactgctgctcgtgctgcaggggctggtagacaaaggcaatacc
gtgatcgtcatcgagcacaatctcgacgtggtcaagtccgccgactggatcatcgatttg
ggtccggaaggaggcgacggcggcggcacgattgtcacgcagggcacacccgaacaggtg
gcgcaatgcgaagcgtcctggacgggcaagttcctcaaggacatgctgtga
DBGET
integrated database retrieval system
