Bifidobacterium bifidum BGN4: BBB_1239
Help
Entry
BBB_1239 CDS
T02135
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor
KO
K03086
RNA polymerase primary sigma factor
Organism
bbf
Bifidobacterium bifidum BGN4
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BBB_1239 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbf03021
]
BBB_1239 (hrdB)
Transcription machinery [BR:
bbf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BBB_1239 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DprA_WH
Motif
Other DBs
NCBI-ProteinID:
AFL04831
UniProt:
I3WIW8
LinkDB
All DBs
Position
complement(1468347..1469849)
Genome browser
AA seq
500 aa
AA seq
DB search
MATTVPDDTDAKTKSEKKGTAARTASTADKKTAAGRKSAAGKKTSSSSAASKSTARKSSA
KAAAPAKPTRKRAASKSAKAVKDETEEMAKTEELANEDSSDDLDDVQVDEDGLENLDDDL
DDVDDGGLDGDDDGIDDESGEDDDVPEDEEDDEGTEPGRKEPEQPKEKGAFVVRDDDDDE
NLTPSGNPKRRVIAAGATADPVKDYLKQIGRVSLLNAEQEVDLSERIEAGLYAQHLLDTE
SDGMDFKRKRELKWAANDGKKAKDHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLI
RAVEKFDWKKGFKFSTYATWWIRQAITRAMADQARTIRVPVHMVEVINKLSRVQRQMLQD
LGREPTPDELARELDMPVEKVQEVQKYGREPISLHTPLGEDGDSEFGDLIEDTDAIAPSD
AVAFSLLQEQFKQVLETLSPREAGVIKMRYGLEDGQPKTLDDIGRVYGVTRERIRQIESK
TMSKLRHPSRSQTLRDFLDQ
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgacagtcccggacgatacggacgccaagacgaaatccgagaagaagggaacc
gccgcgcgtacggcctctacggcagacaagaagaccgcagcgggcaggaaatccgccgcg
ggcaagaagacctcgtcgagctccgccgcgtccaagtccacggcacgcaagtcctcggcg
aaggcagccgcgcccgcgaagcccacccgcaagcgcgccgcgtccaagtcggcgaaggcc
gtcaaggacgagaccgaggagatggcgaagaccgaggaactcgccaacgaggattcctcg
gacgatctcgacgacgtccaggtcgatgaggatggtctggagaaccttgacgacgatctc
gacgatgtcgatgacggcggtctggatggcgacgatgatggcatcgatgacgaatccggt
gaggatgacgacgttcccgaggacgaagaggacgacgaggggaccgaacccgggcgcaag
gagcctgaacagcccaaggagaagggcgcgttcgtggtgcgcgacgatgacgacgacgag
aacctgaccccgtcgggcaatccgaagcgccgcgtcatcgctgcgggcgccacagcggat
ccggtcaaggactatctcaagcagattggccgtgtcagcctgctgaacgccgagcaggag
gtggacctctccgagcgcatcgaggccggcctgtacgcccagcatctgctcgataccgag
agcgacggcatggacttcaagcgcaagcgcgagctcaagtgggcggcgaacgacggcaag
aaggccaaggaccacctgctggaggcgaacctgcgactcgtggtgtcgctggccaagcgc
tacaccggtcgtggcatgctcttcctcgacctgattcaggaaggcaacctgggcctcatc
cgagccgtcgagaagttcgactggaagaagggcttcaagttctccacctatgccacgtgg
tggatccgtcaggccatcacccgcgccatggccgatcaggcacgcaccatccgcgtgccc
gtgcacatggtcgaggtcatcaacaagctgtcgcgcgttcagcgccagatgctgcaggat
ctgggccgcgagcccacgccggacgagctggcccgcgagctcgacatgccggtcgagaag
gtgcaggaggtgcagaagtacggccgcgagccgatctcgctgcacacgccgctgggcgag
gacggcgattccgagttcggcgacctcatcgaggacaccgacgccatcgcgccgtccgac
gcggtcgcgttctcgctgctgcaggagcagttcaagcaggtgctggagactctgagcccc
cgcgaggccggcgtcatcaagatgcgttacggtttggaggacggccagcccaagacgctg
gacgatatcggccgcgtgtacggcgtgacccgtgagcgtatccgccagatagagtccaag
acgatgtcgaagctgcgccacccgtcgcgctcccagaccctgcgcgacttccttgatcag
tga
DBGET
integrated database retrieval system
