Bifidobacterium bifidum BGN4: BBB_1424
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Entry
BBB_1424 CDS
T02135
Symbol
dacB
Name
(GenBank) D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf00550
Peptidoglycan biosynthesis
bbf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
BBB_1424 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bbf01002
]
BBB_1424 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bbf01011
]
BBB_1424 (dacB)
Enzymes [BR:
bbf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
BBB_1424 (dacB)
Peptidases and inhibitors [BR:
bbf01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
BBB_1424 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
bbf01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
BBB_1424 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
DAHL
Motif
Other DBs
NCBI-ProteinID:
AFL05015
UniProt:
I3WJF2
LinkDB
All DBs
Position
complement(1695282..1696745)
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AA seq
487 aa
AA seq
DB search
MASKAAARHHMIRHLPMTRRTVTVAVSAVIAVAVMAGYFVADIYDVAPGILTLRGVDRVA
IPDPQDALTGGTVAAGVDASMPVDAQGAKTILDEFSASEGVGKSFSLAIADGKGNIVAEH
DATIPRQPASTLKTLTAFAAATTLDMGSTLDTKTYLIQGDDNRKTVVLQGEGDMLLSDGE
SDPSHINGHAGLGTLAQRTAEALKQRGITQVDLLYDDSLFGQDRTPAGVTENNAEHRYYT
AISTMAVDGGRTWTDMVKPANPDDSSQYPVLSQQPVLDAATTFAKRLADNGITVTSGPTA
GAAPSGTSALASVSSAPLNEVMAFMLRHSDNTLAQLFGRLTALKRQAGNSIKTDTQAVAD
TLAEQGIDTSGLQMADCSGLTPGSKVSVTTLIEVQERNLTAGIATAAAEGLSIPGLVGTA
RNRIVTGPDNGLFRVKTGSLDAVTSLAGNVSRVKGGVLSFAVIVNDPENQWSAIEAINVM
AAKLAKL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
gtggcatcaaaggctgcggcccgacatcatatgattcggcatctgccgatgacgcggcgt
accgtcaccgtcgcggtgtccgccgtcatcgccgtcgcggtgatggcggggtatttcgtg
gctgacatctatgacgtggcacccggcatcctgacgttgcggggagtggaccgcgtcgcg
attcccgacccgcaggacgcgctcacgggcggcacggtcgccgccggcgtcgacgcgtcc
atgcccgtcgacgcccagggcgcgaagaccatcctcgacgagttctccgccagcgagggc
gtgggcaaatccttctcgctggccatcgcggacggcaagggcaacatcgtagccgagcat
gacgccacgattccccgccagcccgcatcgaccctgaagacactgaccgcgttcgcggcg
gcgaccacgctggacatgggctccacgctcgacaccaagacctatctcatccagggcgac
gacaaccgcaagaccgtggtgctgcagggtgagggcgacatgctgctgtcggacggggag
agcgatccctcgcacatcaacggccatgccgggctgggcacgctggcgcagcgcaccgcc
gaggcgttgaagcagcgcggcatcacgcaggtcgacctgctgtacgacgattcgctgttc
gggcaggatcgtacgccggctggcgtcacggaaaacaacgcggagcaccggtactatacg
gcgatctccacgatggccgtcgacggcggacgcacctggaccgacatggtcaagccggcc
aatcccgacgattccagccaatacccggtgctgtcccagcagcctgtgctggacgcggcg
acgaccttcgcgaagcggctcgccgacaacggcatcaccgtgacgtccgggccgaccgcg
ggcgcggcgccaagcggcacttcagcgctggcctcggtcagctcggcgccgcttaacgag
gtcatggcgttcatgctgaggcattccgacaatacgctagcccagctattcggccgtctg
acggcgctcaagcgtcaggccggcaacagcatcaagaccgacacgcaggccgtcgccgac
acgctcgccgagcagggcatcgacacgtccggcctgcagatggccgactgttccggtctg
acgccaggatcgaaggtcagcgtgaccacgctgatcgaggtgcaggagcgcaatctcacc
gccggcatcgccaccgcggcggcggagggactgtccatccccggcctggtcggcacggcg
aggaaccgtatcgtcaccggcccggacaacggcctgttccgcgtgaagaccggcagcctc
gacgccgtgacctcgctcgccggcaacgtgtcccgcgtcaagggcggcgtgctgtcgttc
gccgtgatcgtcaacgacccggagaaccagtggtcggccatcgaggcgatcaacgtgatg
gccgccaaactggccaagctgtaa
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