Bifidobacterium bifidum BGN4: BBB_1503
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Entry
BBB_1503 CDS
T02135
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
bbf
Bifidobacterium bifidum BGN4
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bbf03016
]
BBB_1503 (truB)
Enzymes [BR:
bbf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
BBB_1503 (truB)
Transfer RNA biogenesis [BR:
bbf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
BBB_1503 (truB)
Prokaryotic type
BBB_1503 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
PseudoU_synth_2
DKCLD
Motif
Other DBs
NCBI-ProteinID:
AFL05094
UniProt:
I3WJN1
LinkDB
All DBs
Position
complement(1798379..1799671)
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AA seq
430 aa
AA seq
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MGTVPEASGGEQAPIVAAEASPVAGSAAPATPTSGLLVVDKPRGVTSHDIVAAARGALHM
KKVGHAGTLDPMATGVLVVGFGNATRLLNHIVEHDKTYEATIRLGQSTTTDDADGELLSA
TSPERWQELLALPVAGGPQSAGENGPANAAKGSAVAAAKVADDGSAYHPYQEAFLPDCQQ
LWRDRIDDIIALQLTGSIEQVPNTFSAIKINGQRAYDLARDGKDVQLKARRITVSAFGVL
DVRFGYAPTRQLGLPLVSAADGLATTERDDAEATPVIDVDVRVSCSAGTYIRALGRDLGA
ALGVGGHLIRLRRTRVGGFDVSSPNVITAHVETREYTDRNGNHQSRNRAVLDVIGGELAG
KALTMLDAARGTMPLLAITDQDAVNLRYGRRIPYDIHGTAAAYLPQSGEVVALVERAKRG
EAKPATVFGA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgtacccgaagcctcgggcggcgagcaggctccgatcgtggctgcggaagcc
tcgcctgtggctggttccgccgcgccggcgactcctacgtcgggattgttggtcgtggac
aagccgcgtggcgtcaccagtcatgacatcgtcgcggctgcgcgcggcgcattgcatatg
aaaaaggtggggcacgccggcaccctcgacccgatggccaccggcgtgctggtcgtcgga
ttcggcaacgccacgcggttgctgaaccatatcgtcgaacacgacaagacctatgaggcg
acgattcgcctcggccagtccaccaccaccgacgatgccgatggcgaactgctgtcggct
acctcgcccgagcgctggcaagagctgctggcattgccggtcgccggtgggcctcagtcg
gctggcgagaatgggcctgcgaacgcggccaagggttcggccgtggcagccgcaaaggtc
gcggatgacggctccgcgtatcatccgtatcaggaagcgtttttgccggattgccagcag
ctgtggcgcgaccgtatcgatgacatcatcgcattgcagctcaccggcagcatcgagcag
gtgccaaacacgttctccgcaatcaaaatcaacggtcaacgtgcctatgatctggcccgc
gacggcaaggacgtgcagctcaaggcgcgtcggatcaccgtcagcgcgttcggtgtgctg
gatgtgcggttcggctatgccccgacgcggcagctaggacttccactcgtctcggcggcg
gacggactggcaacgacggaacgggatgacgcggaggcgacgccggtgatcgacgtcgat
gtgcgcgtcagctgctcggcgggcacatatatccgcgcgctcgggcgcgacctgggcgcg
gcgctgggagtcggcgggcacctgatacggctgcggcgcacgagggtgggcggtttcgac
gtctcctcgccgaatgtcatcaccgcgcacgtggagacacgcgagtacaccgaccgcaac
ggcaaccaccagtcccgcaaccgcgccgtgctcgatgtgattggcggcgagctcgcaggc
aaggcgctgacgatgctggatgccgcgcgaggcaccatgccgctgctcgccatcaccgat
caggacgccgtcaacctgcggtacggccggcgtatcccctatgacatccacggtacggcc
gccgcgtatctgccgcagagcggggaagtggtggcactcgtcgagcgcgccaagcgtggc
gaggccaagccggccaccgtattcggcgcgtaa
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