Bifidobacterium bifidum BGN4: BBB_1607
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Entry
BBB_1607 CDS
T02135
Symbol
gpsI
Name
(GenBank) guanosine pentaphosphate synthetaseI/polyribonucleotide nucleotidyl transferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBB_1607 (gpsI)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_1607 (gpsI)
03016 Transfer RNA biogenesis [BR:
bbf03016
]
BBB_1607 (gpsI)
Enzymes [BR:
bbf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
BBB_1607 (gpsI)
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBB_1607 (gpsI)
Transfer RNA biogenesis [BR:
bbf03016
]
Prokaryotic type
tRNA degradation factors
BBB_1607 (gpsI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
PCB_OB
MUG2_C
KH_5
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AFL05197
UniProt:
I3WJY4
LinkDB
All DBs
Position
complement(1911853..1914516)
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AA seq
887 aa
AA seq
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MEGPEIKAVEAVIDNGSFGKRTLRFETGRLAQQADGAVAAYLDDDSMILSTTTAGSSPKE
NYDFFPLTVDVEEKMYAAGKIPGSFFRREGRPSSEAILACRIIDRPLRPLFPHTLRNEVQ
VVETVLSIDPDDAYDVIALNAASASTMISGLPFEGPVSGVRLALIDGQWVAFPRWSERER
AVFEIVVAGRVIENGDVAIAMIEAGAGKNAWHLIYDEGQIKPDEEVVAQGLEAAKPFIKV
ICEAQNELKEKAAKETKDFQLFPEYTDELYARIDEIAHEDLNEALSIAEKLPRQDRIHEI
KEHVREVLANEFTDMDDAEKEKELGNAFKELQRQIVRRRILTEDYRIDGRGLRDIRTLSA
EVDIVPRVHGSALFQRGETQILGVTTLNMLKMEQQIDALSGPQSKRYMHNYEMPPYSTGE
TGRVGSPKRREIGHGALAEKAIVPVLPNREEFPYAIRQVSEAIGSNGSTSMGSVCASTLS
LLAAGVPLKAPVAGIAMGLVSGDVDGQHVFKTLTDILGAEDAFGDMDFKVAGTSEFITAL
QLDTKLDGIPADILAGALQQAHEARTTILDLINECIDGPAEMSEYAPRIITTTVPVDKIG
EIIGPKGKMINQIQEDTGAEIAIEDDGTVFISSEGGEAAEKAKAIIDQIANPHVPEAGET
YNGKVVKTTSFGAFVNLTPGTDGLLHISQIRNLANGERIDAVEDVLKEGDTVEVVVQGVD
DRGKISLAIPGFEDQENNAGRGRRDDRGDRGDRRGGPRRRSDRDDRRDDRDYDDRPRRSS
RRDDRDDDFDDRPRRRRSDRDYDDRDDRGYDRDDRPRRRSDRDDRDYDRDDRRGGRSDDR
RGGRRGGYDRNPRYATDENYDEYRADRVERSERPRRRVRRDFDPFEN
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgaaatcaaggccgtggaggccgttattgacaatggttcgttcggaaaa
cgaaccctgcgcttcgagacgggtcgtctcgcacagcaggcggatggcgcggtggcagcc
tatcttgacgatgattcgatgattctgtccaccaccaccgccggttccagcccgaaggag
aactacgacttcttcccgctgaccgtcgacgtggaggagaagatgtacgccgcgggcaag
atcccgggctcgttcttccgccgtgaaggccgcccgagctccgaggcgatcctggcgtgc
cgtatcatcgaccgtccgctgcgcccgctgttcccgcacacgctgcgcaacgaagtgcag
gtcgtggagaccgtgctgtccatcgatcccgacgacgcctacgacgtcatcgccctgaac
gcggcctccgcttcgacgatgatctccggcctgccgttcgaaggcccggtctccggcgtg
cgtctggcgctgatcgacggccagtgggtcgccttcccgcgctggagcgagcgtgagcgc
gccgtgttcgagatcgtggtcgccggccgtgtcatcgagaacggtgatgtcgccatcgcc
atgatcgaagccggtgccggcaagaacgcctggcacctcatctacgacgagggccagatc
aagccggacgaggaagtcgtcgcgcagggtctcgaagccgccaagccgttcatcaaggtg
atctgtgaagcccagaacgagctcaaggagaaggcagccaaggagaccaaggacttccag
ctgttccccgagtacaccgacgagctgtacgcccgcatcgacgagatcgcccacgaggac
ctcaacgaggcactgtccatcgcggagaagctgccgcgccaggaccgcatccacgagatc
aaggagcacgtgcgtgaggtgctcgcgaacgagttcaccgacatggacgatgccgagaag
gagaaggaactcggcaacgcgttcaaggagctgcagcgccagatcgtgcgccgccgcatc
ctcaccgaggactaccgcatcgacggccgtggcctgcgcgacatccgcaccctgtccgcc
gaggtggacatcgtgccgcgcgtgcacggctccgccctgttccagcgcggcgagacccag
atcctgggcgtcaccacgctgaacatgctcaagatggagcagcagatcgacgcgctttcc
ggcccgcagtccaagcgctacatgcacaactacgagatgccgccgtactccaccggtgag
accggccgcgtcggctccccgaagcgccgcgagatcggccacggcgccctcgccgagaag
gccatcgtgccggtgctgccaaaccgcgaggagttcccgtacgccatccgtcaggtctcc
gaggccatcggttccaacggttccacctcgatgggctccgtgtgcgcctccacgctgtcg
ctgctcgccgccggcgtgccgctgaaggccccggtcgcgggtatcgcgatgggtctggtc
tccggtgacgtcgatggccagcacgtcttcaagacgctcaccgacatcctgggcgccgag
gacgcgttcggcgacatggacttcaaggtcgccggcacctccgagttcatcaccgccctg
cagctcgacaccaagcttgacggcattccggccgatatcctggctggtgccctgcagcag
gctcacgaggcccgcaccacgatcctcgacctcatcaacgagtgcatcgacggcccggcc
gagatgagcgagtacgccccgcgcatcatcaccaccaccgttccggtcgacaagatcggc
gagattatcgggccgaagggcaagatgatcaaccagatccaggaggacaccggcgccgag
atcgccatcgaggatgacggtaccgtgttcatctcctctgaaggcggcgaagcggccgag
aaggccaaggccatcatcgaccagatcgccaacccgcacgtgccggaggccggcgagacc
tacaacggcaaggtcgtcaagaccacgtcgttcggcgcgttcgtcaacctcaccccgggc
accgacggcctgctgcacatctcgcagatccgcaacctcgccaacggcgagcgcatcgac
gccgtcgaggatgtgctcaaggaaggcgacaccgtcgaggtcgtcgtgcagggcgtggat
gaccgcggcaagatctcgctcgccatccccggtttcgaggatcaggagaacaacgccggc
cgtggtcgtcgtgacgaccgtggcgaccgtggtgaccgccgcggaggcccgcgtcgccgt
tccgaccgcgatgaccgccgtgacgaccgcgactacgacgaccgtccgcgtcgctcctcc
cgccgtgacgaccgcgatgacgatttcgatgatcgcccgcgccgtcgtcgttccgaccgc
gactacgacgaccgtgacgaccgcggctatgaccgcgatgaccgtccgcgtcgccgttcc
gaccgtgacgaccgcgattacgatcgcgacgaccgtcgtggcggccgttccgatgatcgc
cgtggtggccgtcgtggcggttacgatcgcaacccgcgttacgcgaccgacgagaactac
gacgagtaccgcgccgaccgcgtggagcgctccgagcgtccgcgccgccgcgtgcgtcgc
gacttcgatccgttcgagaactga
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