Bifidobacterium bifidum BGN4: BBB_1668
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Entry
BBB_1668 CDS
T02135
Symbol
rho
Name
(GenBank) transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
bbf
Bifidobacterium bifidum BGN4
Pathway
bbf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBB_1668 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbf03021
]
BBB_1668 (rho)
03019 Messenger RNA biogenesis [BR:
bbf03019
]
BBB_1668 (rho)
Transcription machinery [BR:
bbf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBB_1668 (rho)
Messenger RNA biogenesis [BR:
bbf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBB_1668 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
SAP
Spore_III_AA
PIP5K
Motif
Other DBs
NCBI-ProteinID:
AFL05258
UniProt:
I3WK45
LinkDB
All DBs
Position
complement(1987728..1989788)
Genome browser
AA seq
686 aa
AA seq
DB search
MATSQNLEGMKLIELKELAKQMGLRGTSTMRKPELVATLQAARSGGEAPAGVTVRPVKGA
ASKPTQQTQPAAQAAQTPEQAPKAEPKGSAPVSAADDAVAGLVASLPEPDAASTRTPRIS
RQKAAESDSKDDRAAAPRRRTRDDAKAGQVAADLFDELDIAPADDQPRHRDDAADSGMMR
RRRRTIEPRERDQQNDTVRDLDDILATLPVQNANADAARGTRGDRDNRDDDEREFTRRNR
SDRADRSDRGDRGGDRNDRGDRGNDRNNDRRQRRMRGRDRGGRDYDDRDTREVRISDHQD
NGGDDLVPVAGIVDVLDSYAFVRTSGYLPGPNDVYISMGQVKKYGLRKGDAVTGSIRAPR
EGDRRNQRQKFVPLQSVDTINGMSVEEAANRPQFAKLTPLYPQERLKQETTPNKLTGRIM
DIVSPIGKGQRGLIVSPPKAGKTITLQNIANAITTNNPEVHLMVVLVDERPEEVTDMERT
VAGEVISSTFDRPASDHTTVAELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASG
RILSGGVDAQALYPPKKFFGAARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNME
LRLSRELADKRLFPAIDVNASGTRREELITSPQELPIIYRLRRLLGGMEPEQAYQTLVPR
LKKTATNRDFLAAIIQQSNSNPVNGN
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtggcaactagccagaatcttgaaggtatgaagctgatcgagctcaaggagctcgccaag
caaatgggtctgcgcggtacgtcgacgatgcgcaagccggaattggtcgccaccctgcag
gctgcacgatcaggcggcgaggcgccggcgggcgttaccgtgcgaccggtgaagggcgcc
gcaagcaagccgacccagcagacgcagcccgctgcacaggccgcgcagactccggaacag
gctcccaaggcggagcccaagggaagtgcaccggtgtcagcggcggatgatgcggtggcc
ggactggtcgcgtctctgcccgagcccgatgcagcctcgacccgcacgccgcgtatctcc
cgccagaaggccgccgaatccgacagcaaggacgaccgcgccgcggctcctcgccgtcgc
acccgcgacgatgcaaaggcgggccaggtggctgccgatctgtttgatgaacttgacatc
gcgccggcggacgatcagccgcgtcatcgcgatgatgcggctgattccggcatgatgcgt
cgtcgtcgccgtaccatcgaaccgcgcgagcgcgaccagcagaacgacaccgtccgcgac
ctcgacgatattctcgccacgcttccggtacagaacgccaatgcggacgccgcccgcggc
acccgtggtgaccgtgataatcgagatgacgacgagcgcgaattcacccgccgcaaccgt
agcgaccgcgctgaccgttccgaccgcggcgaccgcggcggcgatcgcaatgaccgtggc
gaccgcggtaacgaccgcaacaacgaccgtcgccagcgccgcatgcgcggccgcgaccgt
ggcggccgcgactacgatgatcgcgacacccgcgaagtgcgcatctccgaccatcaggac
aacggcggcgacgatctcgtgccggtcgccggcatcgtcgacgtgctcgactcctacgcc
ttcgtgcgcacttccggctacctgcccggcccgaacgacgtgtacatctcgatgggtcag
gtcaagaagtacggcctgcgcaagggcgacgccgtgaccggatccatccgcgcgccgcgc
gagggcgaccgccgcaaccagcgccagaagttcgtgccgctgcagtccgtcgacaccatc
aacggcatgagcgtcgaagaggcggccaaccgcccgcagttcgccaagctcaccccgctg
tacccgcaggagcgcctcaagcaggagaccacgccgaacaagctcaccggccgcatcatg
gacatcgtttccccgatcggcaagggccagcgcggcctgatcgtctccccgccgaaggcc
ggcaagacgatcacgctgcagaacatcgccaacgcgatcaccacgaacaaccccgaagtg
cacctgatggtcgtgctggtggacgaacgccccgaagaagtcaccgacatggagcgcacc
gtggccggcgaggtcatctcctcgaccttcgaccgtccggcctccgaccacaccaccgtc
gccgagctcgccatcgagcgcgccaagcgactcgtggagctcggtcaggacgtggtggtg
ttgcttgactcgatgacccgtctcgcccgcgcctacaacatcgctgcgccggcctccggc
cgcatcctgtccggtggcgtggacgcccaggcgctctacccgccgaagaagttcttcggc
gccgcccgcaacatcgaaaacggcggctcgctgaccatcatctcctccgcgctggtggag
accggctccaagatggacgaggtgatcttcgaggagttcaagggcaccggcaacatggaa
ctgcgtctgagccgcgagctggccgacaagcgcctgttcccggccatcgacgtgaacgcc
tccggcacccgccgcgaagagctcatcacctcgccgcaggaactgccgattatctatcgt
ctgcgccgtctgctcggcggcatggagcccgagcaggcataccagacgctggtgccgcgc
ctgaagaagaccgcgacgaaccgcgatttcctcgccgccattatccagcagagcaacagc
aacccggtcaacggcaactga
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