Bifidobacterium bifidum BGN4: BBB_1736
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Entry
BBB_1736 CDS
T02135
Symbol
topA
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbf
Bifidobacterium bifidum BGN4
Brite
KEGG Orthology (KO) [BR:
bbf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbf03032
]
BBB_1736 (topA)
03400 DNA repair and recombination proteins [BR:
bbf03400
]
BBB_1736 (topA)
Enzymes [BR:
bbf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BBB_1736 (topA)
DNA replication proteins [BR:
bbf03032
]
Prokaryotic type
DNA Topoisomerases
BBB_1736 (topA)
DNA repair and recombination proteins [BR:
bbf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BBB_1736 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
HC2
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AFL05326
UniProt:
I3WKB3
LinkDB
All DBs
Position
complement(2062521..2065439)
Genome browser
AA seq
972 aa
AA seq
DB search
MGTGNKLVIVESPTKAKKIGGYLGSGYTVMASVGHIRDLAQPSQIPADDKARFGKFGVDV
DDGFKPYYIVDGDKKKTVAELKKALKNSDELYLATDEDREGEAIAWHLVQTLKPKVPVKR
MVFHEITKDAIKTSLGNTRNVDEDMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRV
QSVATRLIVERERERMAFVRASYWDVTAVLGATDAEGEPASFESRMVSLGGKRLAGSKDF
SDDGKLTPSGFADNVCQLDEAHANALAKLLADATFTVASMETKPYRRRPLPPFTTSTLQQ
TAGNRLSMSSRQTMRAAQGLYENGYITYMRTDSVTLSQEAIAAARDAVEYHFGKSFLSDG
PKQYVTKTASAQEAHECIRPAGARFHDPAELSGKVPADQLKLYTLIWQRTLASQMADATG
STATVRLSAPAGEDGEAMFQASGTVIEFPGFMKATGEGRRAAAPAASSMGAGDGEAAAKR
ASRETDDNGSLPPMQTGDRLAASSVEADGHETQPPARYTEASLVKTLEAKGIGRPSTYAS
IISTIIDRGYVYERGRALIPSWLAFSVIKLLETKFPKYVDYQFTADMENGLDQIAHGQET
GRDWLTHFYFGSGGDAATSADEAHAGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGP
YLEDMNHVDAAGNPKRASLPDTMAPDELTVQVGHELIDSNAGGPRELGVDPASGGTVEVR
NGRFGPYVALVPLETDGGSSETKSKKTTVPKPKMASLFKTMSPESITLDDALKLLSLPRT
VGVYEEANTETGELGEVTVEANNGRYGPYLTKTGADGKSETRSLASEDEIFTVDVDKAKE
LFAQPKYGRGRGRGTAKPPLRELGPDPETGKNVTIKDGFYGAYITDGETNRTVPKQYTAE
SIEPAEAFRLLAEKRAAGPSKRGRRKTTGAAAKKTAAKKSSTASATKKTVTAKKTAAKKT
TARKTAAKKTAE
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggcaccggcaacaagcttgtcatcgtggagtctcccaccaaagcgaagaaaatcggt
gggtatcttggcagcggctacaccgtcatggcatcggtcggtcacatccgtgaccttgca
cagcccagtcagattcccgcggacgacaaggccaggttcggcaagttcggcgtggacgtc
gacgatggcttcaaaccgtactacatcgtcgacggtgacaagaagaagaccgtcgccgaa
ctgaaaaaagcgctgaagaactccgacgagctctacctcgccactgatgaggatcgcgaa
ggggaggcgatcgcctggcacctggtgcagacgctcaagccgaaggttcccgtcaagcgc
atggtgttccacgagatcaccaaggacgccatcaagacgtcgctgggcaacacccgcaac
gtggacgaggacatggtggacgcgcaggagacccgccgcatcctcgaccgcctctatggc
tacgagctgtcgcccgtgctgtggcgcaaggtgggcccgggattgtcggccggccgcgtc
cagtccgtcgccacacgcctgatcgtcgagcgtgagcgcgagcgcatggcgttcgtgcgc
gcctcctactgggacgtgaccgcggtgctgggcgcgacggacgcggagggcgagccggcg
tcgttcgaatcgcgcatggtgtcgcttggaggcaagcgacttgcgggttccaaggatttt
tcggatgacggcaagctcacgccgtccggtttcgctgacaacgtatgccagctggatgag
gcccatgcgaacgccctcgccaagctcctggccgacgcgaccttcaccgtggcatcgatg
gagaccaagccgtaccgtcgccgcccgctcccgccgttcaccacatccacgctgcagcag
acggccggcaaccgcctgtccatgagctcgcgtcagaccatgcgtgccgcgcaggggctg
tacgagaacggttacatcacgtatatgcgaaccgattcggtgaccttgtcgcaggaggcc
atcgccgccgcccgtgatgccgtcgaatatcatttcggaaagtcgttcctgtccgatggg
cccaagcagtatgtgacgaagaccgctagtgcgcaggaggcccacgaatgcatccgaccc
gccggcgcgcggttccatgacccggcggagctctccggcaaggtgcccgccgaccagctg
aaactgtacacgctgatctggcagcgcacgctcgcttcccagatggccgacgccaccggc
tccaccgcgaccgtgcgtctgtcggctcctgccggcgaggacggcgaggcgatgttccag
gcgtccggcacggtgatcgagttccccggattcatgaaggccaccggggagggccgtcgt
gcggcggcccccgctgcctcctcgatgggtgccggtgacggcgaggccgcggcgaaacgc
gcctcgcgcgaaaccgacgacaacggatcgctgccgccgatgcagaccggtgaccgtctc
gccgcgtcctcggtggaggctgacgggcacgagacccagccgccggcgcgatacaccgaa
gcgtcgctggtgaagacgctggaggccaagggaatcggccgtccttcaacctatgcgagc
atcatctccaccatcatcgaccgtggatacgtctacgagcgcggtcgcgccctgattcca
tcgtggctggcgttctcggtcatcaagctgctggagacgaaattccccaagtacgtcgat
taccagttcaccgcggatatggagaacgggctcgaccagatcgcgcacggtcaggagacc
ggccgtgactggctgacccatttctatttcggttccggcggcgacgcggcgacttcggca
gacgaagcgcacgcgggcctgcagcagcaggtcgcgcagctgggggagatcgacgcccgc
gccatcaacaccatcgacatcggcgacggactgcacgtgcgcgtcggtcggtacggcccg
tatctcgaagacatgaaccacgtggatgcggcgggcaaccccaagcgggcctccctgccc
gacaccatggcgcccgacgagctgaccgtgcaggtcggccatgagctcatcgacagcaat
gccggtggcccgcgcgagctgggcgtcgacccggcaagcggcggcacggtcgaagtgcgc
aacggacggttcggcccgtatgtggccttggtgccgcttgagacggacggcgggtcatcc
gagacgaagtccaagaagaccactgtgcccaagcccaagatggcgtccctgttcaagacg
atgagccccgaatcgatcacgctggacgatgcgctgaaactgttgtcgctgccgcgcacc
gtgggcgtttacgaggaggccaacaccgagaccggcgaacttggcgaggtcacggtcgag
gcgaacaacggccggtacggcccctacctgaccaagaccggagccgacggcaagtccgag
acgcggtctctcgcctcggaggatgagatcttcaccgtggacgtcgacaaggcgaaggaa
ctgttcgcccagccgaaatacggacgcggccgtggacgcggcaccgcgaagccgccgctg
cgcgagctcggccccgatcccgaaaccggcaagaacgtgaccatcaaggatggcttctac
ggcgcctacatcaccgacggcgaaacgaaccggaccgtgcccaagcagtacacggccgag
tccatcgagccggccgaggcgttccgcctgctggccgagaagcgtgccgccggcccgtcc
aagcgcgggcgtcgcaagacgacgggcgccgccgcgaagaagaccgccgcgaagaagagc
tccacggcatctgccaccaagaagacggtcaccgcgaaaaagacggccgccaagaagacc
acggccaggaagaccgccgcgaagaagaccgccgagtag
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