Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0017
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Entry
UT28_C0001G0017 CDS
T03992
Name
(GenBank) UvrD/REP helicase, DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03420
Nucleotide excision repair
bbgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UT28_C0001G0017
03430 Mismatch repair
UT28_C0001G0017
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0017
Enzymes [BR:
bbgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UT28_C0001G0017
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UT28_C0001G0017
MMR (mismatch excision repair)
Other MMR factors
UT28_C0001G0017
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
Viral_helicase1
Dna2
AAA_11
AAA_30
DEAD
RnlA-toxin_DBD
Motif
Other DBs
NCBI-ProteinID:
AKM81836
UniProt:
A0A0G4B1K2
LinkDB
All DBs
Position
13609..16632
Genome browser
AA seq
1007 aa
AA seq
DB search
MLSKKFITEYQKLNPKQREAVDTIEGPVMIIAGPGTGKTQILAMRIANILANAQVNPSNI
LALTFTNSGAYAMRKRLLEIVGPSSYAISIHTFHSFCNEIINTFPEKFLTARRLNQLTDL
EQILYIQSILDKNNFKTIKPLKSPYLYQKAILDSINKLKQENIDPKKFEEKIEQELIDFK
TIDDLYHDKGAYKGEMKGKYKDELSSLERNKELAKVYKDYQKILSDEGKYDYADMILFVL
GAFKKEKDILSYYQEKYQYILVDEFQDTNTAQNEIVRSLGSFYESPNIFAVGDDEQSVFR
FQGASLENILFFSKTYPEAKVIILEDNYRSTQDILDLSRALISNNQNQIAGHLKVSKKLK
SNLTSKGKIYLAEFKNVATENFFIASEIKDLIEKGTDPNEIAVLYKQHSDVEDLTENLAR
LKVPYKLEVGGNILDDPEIQKIINYLKILDIKKPNDLLFFEVLSYDFFNIPPIEIYKLSR
KASKERESIVDTILSENKLSEPIKKFFSTLLDLQHFAQNNTFASTFEYLINNTGYLDYLL
KKEDTVHHLNRLQIFYEEIKKLNVRQKDLNIAGFLKYLDSLTENELKIKDREVEADFAGV
NLMTAHKSKGLEFENVFIFKLIDKHWGNKTKRELIKLPGNILSIQQNNDLSSEALAELEE
ERRLFYVALTRAKKNIYLSFADDYGDQESSKFAVPSQFLTELPNEKILKLETAKYEKESV
KRLALAFQNDKWHPGKALKEFIKQIVEDFSLSATSLNSYINCPKQFFLDHIIRVPKAKDF
SQSYGTAVHKAMENLFLIQIRDGKLATKSDFVKFYVNALDEEILTPAEIQRAKNDGTEIL
EKYYDFYKEEMIKKGPPISCEYNFSSHNVHFDNIPITGKIDKIEMINSIGNTVRIIDYKT
SQPKTVNDLLGQTKTSDKSYLYQAFFYKLLAEYDTSFKWKIAEIEFDFIQPEKGRFKKIK
IPIEEEEYKKFKELVSKSYSEIKKLNFDTNKKSCKAKRECDYINICN
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgctttctaaaaaatttataactgaatatcaaaaactgaatccaaagcaaagagaagcc
gtcgatacgatcgaagggccggtcatgattattgccgggccggggacaggtaagacgcaa
atcttagcgatgagaattgcgaatattttagcgaacgcacaagttaatccttcaaatatt
ttggcgctaacatttaccaactcaggcgcttacgctatgaggaaaagattattggaaatt
gtggggccaagtagctacgccatttctattcatacgtttcactctttttgcaatgaaatt
attaatacttttccggaaaaatttttaacagccagacgcttaaatcaactgaccgattta
gaacaaattctatatattcaaagcattttagataaaaacaatttcaaaactattaaacct
ttaaaaagtccttatttatatcaaaaggcaattttggattcgattaataaattaaaacaa
gaaaatatcgatccaaaaaaatttgaggaaaaaatcgagcaagaactaattgattttaaa
actatcgatgatctctatcacgataaaggcgcatacaaaggcgaaatgaaaggcaaatac
aaagacgagctcagctcattagagcgcaataaagaactagcaaaagtttacaaagattac
caaaagattttaagcgatgaaggtaaatacgattatgccgacatgattctttttgtttta
ggcgcctttaaaaaagaaaaagatatcttaagttattatcaagaaaagtatcaatatatt
ttagtcgatgaatttcaagacactaacacggcccagaacgaaattgtgcgatctttgggc
agcttttatgaaagcccgaacatttttgctgttggcgacgatgagcaatcagtcttccgt
tttcaaggtgcctctttagaaaacattttattcttttctaaaacttatccagaagctaaa
gtgatcattttagaagataattacagatcaactcaagacatattagatttatcgcgagcg
ctaatttctaataaccaaaatcaaattgccgggcatttaaaagttagtaaaaagttaaaa
agtaatttaacttcaaaaggaaaaatatacttagcagaatttaaaaatgtcgccacagaa
aacttttttattgcttcagaaattaaggatctaatagaaaaggggaccgatccgaacgag
attgcggttttatataaacaacatagcgacgttgaagatttaactgaaaacttagcgcgt
ttgaaagtgccatataaattggaagtcggtggaaatattctcgacgatccggaaattcaa
aagattattaattatttaaaaattttagacattaaaaagcctaacgatttattatttttt
gaagtattaagttatgacttctttaatattccaccaatcgagatttacaaactatcgaga
aaagcgagtaaagaaagggaaagtatagtcgatacaatactgtcggaaaacaagctttca
gaaccaatcaaaaagttttttagcaccttacttgacttgcaacactttgctcaaaataac
actttcgctagcactttcgaatatttaattaacaatacgggttatttagattatctattg
aaaaaagaagatacagttcaccatttaaaccggttgcaaattttttatgaagaaattaaa
aaattgaatgtcagacagaaagatttaaatattgctgggtttttgaaatacttagacagc
cttacagaaaatgaattaaaaataaaagatagggaagtcgaagcagattttgccggcgta
aatttaatgacggcgcataaatctaaaggtttagaatttgaaaatgttttcatttttaaa
ttaatcgacaaacactggggtaataaaacaaaacgggaattaattaaattgcccggcaat
attttatcaattcagcaaaacaatgacttgtccagcgaagccttggcggagttggaagag
gaaagacgattattctatgttgcactaaccagagccaaaaagaatatttatctttctttc
gctgatgattacggcgatcaagaaagttcaaagtttgcagttccatcacaatttcttact
gaattaccaaatgaaaagatattgaaattggaaacagctaagtatgaaaaagaaagtgtt
aagagattggcattggcgtttcaaaatgacaaatggcaccctggcaaagcactgaaggag
tttattaagcaaatcgttgaagatttttctctatcggcaacttcgcttaactcatatatc
aactgtccaaaacaatttttcctagatcatattattcgcgtccctaaggccaaagatttt
agccaaagctatgggacagctgttcataaagcgatggaaaatctatttctcattcaaata
cgcgatggcaagttagcaacgaaatcagattttgtaaaattttatgttaacgcattagac
gaggaaatactgacaccggcagaaatacaaagagccaaaaacgatggtacagaaatatta
gaaaagtattacgatttctacaaagaagaaatgattaaaaaaggaccgccgatttcttgt
gagtacaatttttcttcccataatgttcattttgataatataccgatcacgggtaaaatt
gataagattgaaatgataaacagcattggtaatactgtcagaattatcgattacaaaacc
agccaaccaaaaacagttaatgatcttttggggcaaacgaagactagtgataaatcatat
ttgtatcaagcgtttttttataaactcttggctgaatacgacacatcgtttaagtggaaa
attgccgaaatagaatttgattttattcaaccagaaaagggaagatttaaaaagattaaa
attccaattgaggaagaagaatataaaaaatttaaagagctggtttccaaatcttatagc
gaaatcaaaaaattgaattttgataccaataaaaaatcgtgtaaagccaaacgcgaatgt
gattatataaatatttgtaattaa
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