Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0245
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Entry
UT28_C0001G0245 CDS
T03992
Name
(GenBank) ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03420
Nucleotide excision repair
bbgw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
UT28_C0001G0245
03430 Mismatch repair
UT28_C0001G0245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0245
Enzymes [BR:
bbgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
UT28_C0001G0245
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
UT28_C0001G0245
MMR (mismatch excision repair)
Other MMR factors
UT28_C0001G0245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_14
AAA_11
DEAD
ResIII
VitD-bind_III
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
AKM82056
LinkDB
All DBs
Position
complement(226815..228674)
Genome browser
AA seq
619 aa
AA seq
DB search
MENENILTGLNVDQKKAVLQTEGPVLILAGAGSGKTKVLTHRIAYLIREKNVHPQNILAV
TFTNKASEEMKKRINHLLGEKAPVNSYRQVVSLLPWMGTFHSICCKILRQEIHNIEFRRS
FVIYDSDESLAAIKNAMDELNIDKKQYSPKTIKNFISGAKNELMNPKEYAKYSKGHFGEV
VVRVYIQYQKELKNANALDFDDLLVKTVELFTKFPEILKRYQELFRYILIDEYQDTNTVQ
YRLVNLLSEKYKNICVVGDDFQAIYGFRGANFKNILDFEKDYPEAVVIKMEQNYRSTKNI
LEAAQSVIERNTLRSEKKLWTENEEGMPASVYEANNELDEIEFVKNEIVAFSHMNSLNDF
TILYRTNAQSRIIEEFFLQNRIPYRLIGALRFYDRREIKDILAYLKVIHNESDKVSLRRI
INTPTRGIGEKTAAAFDLENPKIKVFMQMMENFRNAAKEKKIDELIDEVTRESGYKNYIL
DGTEEGESRWENIEELKSVAQKSESLEEFLENVALVSDVDNYNKDAEAVTLMTLHNAKGL
EFPIVFMVGMEEGLFPHSNCLADPNEVEEERRLCYVGMTRAQKRLYMTHARCRMIFGTTS
ANMPSRFLSEIPEYLIERI
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgaaaatattttaactgggctcaatgtcgatcagaaaaaagctgtgcttcaa
accgaagggccggttttgatattggctggtgcgggctctggtaaaaccaaagttttgacg
catcgaatcgcctatttaatccgtgagaaaaatgttcatcctcaaaatattttggcggtc
acttttactaataaagcctccgaggagatgaaaaaacgtatcaatcatttattgggggaa
aaagcgccggttaactcctacagacaagttgtttcattgcttccttggatggggacgttt
cactccatttgctgcaagattttgcgccaagaaattcacaatatcgaattcagacgaagc
tttgtaatctatgattccgacgaatctttggcggccattaaaaatgcgatggatgaattg
aatattgataaaaaacagtatagtccaaaaactatcaagaattttatttccggcgctaaa
aatgaacttatgaatcctaaagaatatgccaaatattccaagggtcattttggcgaagta
gtagtccgagtctatatccaataccaaaaagaattgaagaacgctaatgccttggatttc
gatgatttactagttaaaaccgtcgagttatttacaaagttccccgaaattttaaaacgg
tatcaggaattatttcgttatattttaatcgatgagtatcaagatactaatacggtccaa
tatcgtttggtcaatttgctttcagaaaaatacaaaaatatttgtgtggtgggcgacgac
tttcaggcgatttatggttttcgaggcgctaattttaaaaatattttagattttgaaaaa
gattatccggaagccgtggtgattaaaatggaacagaactatcggtcgactaaaaatatt
ttggaagcggcccaaagtgtgattgagcgaaacactttaagaagtgaaaagaaactttgg
actgaaaacgaagaggggatgccagcctctgtttatgaagcaaacaacgaactcgacgaa
attgaatttgtgaaaaatgaaattgtggctttttcacacatgaattcactaaacgatttt
acgatcctctatagaaccaatgcccaatcacgtattattgaagagttttttttacaaaac
cgaattccctatcgcttgattggcgctttgcgtttttatgaccgaagagaaatcaaagat
attttggcttatttaaaagtgatccataacgaatcggacaaagtctctttgcgtcgcatt
attaataccccaactcgtgggataggggaaaaaacggcggctgcgtttgatttagaaaat
ccgaaaattaaagtcttcatgcaaatgatggaaaatttccgtaatgcggcaaaagaaaaa
aaaattgatgaattaatcgatgaagtcactcgcgaatcaggttacaaaaattatatttta
gatggaactgaagaaggggagagccgttgggaaaatattgaggaattaaaatcggtagcg
caaaagtctgaatccttggaagaatttttggaaaatgtagcgctggtttccgatgttgat
aattataataaagacgctgaagctgtgacactgatgaccttgcataatgctaaaggactc
gagtttccgattgtttttatggtcggaatggaggaaggtttgttcccccattccaattgc
ttggccgatccaaacgaagtcgaagaggaacgccgcctttgctatgtcggcatgacgcgc
gcacagaaaagattatatatgactcacgctcgttgccgcatgatttttggtacgacatcc
gccaacatgccctcgcgatttttaagcgaaataccagagtaccttatcgaaagaatatga
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