Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0300
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Entry
UT28_C0001G0300 CDS
T03992
Name
(GenBank) polymerase III subunit alpha, DNA polymerase III subunit alpha protein
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03030
DNA replication
bbgw03430
Mismatch repair
bbgw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UT28_C0001G0300
03430 Mismatch repair
UT28_C0001G0300
03440 Homologous recombination
UT28_C0001G0300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbgw03032
]
UT28_C0001G0300
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0300
Enzymes [BR:
bbgw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
UT28_C0001G0300
DNA replication proteins [BR:
bbgw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
UT28_C0001G0300
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
UT28_C0001G0300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
T2SSK
HHH_3
DUF655
HROB
tRNA_anti_2
DUF6866_N
Motif
Other DBs
NCBI-ProteinID:
AKM82109
UniProt:
A0A0G4B2K8
LinkDB
All DBs
Position
277040..280486
Genome browser
AA seq
1148 aa
AA seq
DB search
MKNFVHLHVHSHYSLLDGLGKIPDLVSRAKEMGMDTLALTDHGVMYGAIEFYQECKKQDI
KPIIGVEIYVSPRKMTDKEPGIDKTPYHLVLLAQNEAGYLNLLKITTAAHLEGYYYKPRV
DKAYLKKHSEGLIATTACLGGEIPSHAKNGNIKAAEDALLEYLEIFDKDHFYLELQDHPK
IPEQKKANKILIHLAEKHGIGLIATNDVHYINKDDAEAQDVLLCIQTGKFLSDTNRMSMT
AGGEFIDISFRSPEEMIETFKETPEAITNTVKIAESCNLEIELGKFKFPPFPLPEGETYE
TYLRKLIDERLPKVVDVVTPEMKERIDYEFGVIKDKGYLGYFLIVQDFFHWAKEHEIPTN
TRGSAAGCCVSFALGITAPKLNPLDFNLPFERFLNPFRPSAPDIDIDIADSGRDDLIAYV
TEKYGADRVAQICTFGTMAAKAAIRDVARVLGFPYDFGDYLSKLIPLSTQTHYIGIKDSI
NLVAELKSKYETDPDTRRTLDLAARLEGCARHASVHAAGIVIAPEEITNFTPLMRDNKGG
RIVTQYEMHAVGEDGVGLIKMDFLGLANLTIIQNVLKIIKKTRNIDLNLDDIPIDDPKAF
ELLARGETIGVFQLESEGMRKYIKELKPTTIFDIMAMVALYRPGPMAFIPEYIMRKRNPA
RIKYLDPRMEKILKNSLGLIVYQDDVLMIAIELAGYNWQEVDKFRKAIGKKIVKEMSAQK
EKFFSQIIERGMKEEIAIDLWTQIETFAGYGFNKSHAASYGLVAYQTAYLKSHFPSEYMA
ALLTSEQARDLDKVAFALQETKRMNIAVLPPDVNKSFVDFGVIPETWEISYALASIKNVG
KQSAETIVEERKTNGLFKDFPDFLQRLGGKVLNKKIIEALAQAGALDSLIERNRVLVNID
IILKSISDQNKAAANQMGLFGETALPKAELHLIDVPPADKKQKLTWEKELLGMYVSEHPL
EGLERLLMQAGTPIITLKEKKKDDQVTIAGMITMAKKITTKKGDPMLFAQIEDQTGKIEA
VVFPRVLEKDQDKWVADKIVVVKGRISDKDGQINLIASSINILDEDQKIVETAEPTRLLI
HLSKDATREKLAEVKEILANYPGELAVILKVAQNGGFTEVQTKAKVMRDYTMLQKLKDLL
PNGKIIFD
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatttcgttcaccttcatgttcactctcattattctttattagatggtctggga
aaaatccccgatctagtttcgcgtgccaaagaaatgggtatggataccttggcgttaaca
gatcacggcgtcatgtatggggcaatcgaattttatcaagaatgtaaaaaacaggacata
aagccaattatcggtgtggaaatctatgtttctcctcgaaaaatgaccgataaagaaccg
gggatagataaaacgccttatcatttagttctattagcccaaaacgaagcaggctatttg
aacttacttaaaattacaactgccgctcatcttgaaggatattattacaaaccgcgtgtc
gataaagcatatttaaaaaaacattccgaaggattaattgccacaaccgcttgtttgggc
ggggaaatcccatcgcacgctaaaaacggcaacataaaagccgctgaagatgccctttta
gaatatttagagattttcgacaaagatcatttttatcttgagttacaagatcatccgaaa
attcctgaacaaaaaaaggccaacaagattttaattcatttagccgaaaagcatggcatc
ggactcattgctactaatgacgttcactatataaataaagacgacgccgaagctcaagat
gttttgctttgcattcaaaccggtaaattcctctccgataccaaccgcatgagcatgact
gccggcggagaatttattgatatttccttccggtcaccggaagaaatgattgaaactttt
aaagaaacgcctgaagccataacaaataccgttaaaattgccgagagctgcaatttagaa
attgaactaggcaaatttaaatttccaccttttcccctaccggaaggcgaaacttacgaa
acttatttaagaaagctaattgatgaaagattaccaaaagtcgtcgatgtagtcacgccg
gaaatgaaagagagaattgattatgagttcggtgtcatcaaagataagggctatctgggt
tatttcttaattgttcaggatttttttcactgggccaaggaacatgaaattccaactaat
accagaggttcggccgccggttgttgcgtttcgtttgccttagggatcactgcaccaaaa
ttaaatccgctagatttcaacttgccgttcgaacgttttttaaacccttttcgcccatct
gcacctgatattgatattgatatcgctgactcaggccgtgatgatttgattgcttatgtg
acggaaaagtatggcgccgaccgtgtcgctcaaatctgtacttttggaacaatggcggca
aaagccgcgattcgtgatgtcgcccgtgtcttgggtttcccttatgattttggtgattat
ttaagcaagctaattcccctttcgacccaaactcactatatcggcatcaaagactcaata
aatttggttgcagaattaaaaagtaaatacgaaactgatccagacaccagacgaactctt
gatctagccgccagacttgaaggctgtgctcgacacgcttcggttcatgccgctggcatc
gtgatcgctcctgaagaaattactaattttacgccgctaatgcgtgataacaagggtggc
cgaattgtcacacagtacgaaatgcatgctgtcggcgaagatggcgttggcttaattaaa
atggactttttgggcttagccaaccttacaattattcaaaatgttttgaaaattattaaa
aaaactcgcaatatcgatttgaatttagacgatattccgattgatgatccaaaggcattc
gaacttttagctcgaggcgaaacgattggcgtttttcagcttgagtctgaaggcatgcgc
aaatatattaaagaattaaagccgactaccattttcgatattatggccatggtcgcgctt
taccgccctggtccgatggcttttattcctgagtatattatgcgaaaaagaaatccggcg
cgtattaagtatttggatccacgcatggaaaaaattctaaaaaactccttaggtctaatt
gtttatcaagatgacgttttgatgatcgccatcgaattggcaggctacaactggcaagaa
gtcgacaaattccgtaaagctattggtaaaaaaatcgtcaaagaaatgtccgcccaaaaa
gaaaagtttttctcccaaatcattgagcgcgggatgaaagaagaaatcgccatcgatctt
tggactcaaatcgaaactttcgccggctatggttttaacaaatcacacgctgccagttat
ggtttagtcgcctatcaaaccgcatatttgaaatctcatttcccgtccgaatacatggcg
gcgctacttacttcagaacaagcaagagacttagacaaagtcgcttttgctttacaagaa
actaagagaatgaatattgccgtacttccgccagacgtaaataaatcctttgtcgatttc
ggcgttattccagaaacttgggaaattagttacgctttggcatcaattaaaaatgtgggt
aaacaatccgccgaaactattgttgaagaacgcaaaactaatggtttatttaaagatttt
cctgatttcctccagagacttggcggtaaagttctaaataaaaaaattatcgaggccttg
gcacaagccggcgctttagacagcttaatcgagcgtaaccgggttttggttaatatcgat
attattctaaaatccatttctgaccaaaacaaagccgctgccaatcaaatggggcttttc
ggagagacagccttacctaaagcggaacttcatttgatcgatgtccctcccgccgataaa
aaacaaaaacttacatgggagaaagagttgttgggcatgtatgtttccgaacatccctta
gaaggcttggaaagattattgatgcaagccggaacaccgattatcacgttaaaagagaag
aagaaagacgatcaggtcacaattgccggtatgattacgatggctaaaaagatcaccact
aaaaaaggtgatccgatgctttttgctcaaatcgaggatcaaacgggtaaaattgaagcc
gtagttttcccaagagttttggaaaaagatcaggataagtgggttgccgataaaatcgtg
gtagttaaaggacggattagcgacaaagacggccagattaatcttattgcttcatctatc
aatattttggatgaagatcaaaaaatcgtcgagacagcagagccaaccagactcttaatc
catttgagcaaagatgccacgagagaaaaattagccgaagtcaaagaaattttggctaac
tatcccggcgagttagcagtcatcttaaaggtagcgcaaaacggtggatttactgaagtc
caaactaaagctaaagtcatgcgcgactacacaatgttgcaaaagctaaaagatttatta
cctaatgggaaaattatctttgactaa
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