Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0514
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Entry
UT28_C0001G0514 CDS
T03992
Name
(GenBank) polyribonucleotide nucleotidyltransferase, polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UT28_C0001G0514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbgw03019
]
UT28_C0001G0514
03016 Transfer RNA biogenesis [BR:
bbgw03016
]
UT28_C0001G0514
Enzymes [BR:
bbgw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
UT28_C0001G0514
Messenger RNA biogenesis [BR:
bbgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
UT28_C0001G0514
Transfer RNA biogenesis [BR:
bbgw03016
]
Prokaryotic type
tRNA degradation factors
UT28_C0001G0514
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
AKM82319
UniProt:
A0A0G4B3A3
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All DBs
Position
463828..465930
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AA seq
700 aa
AA seq
DB search
MSQDFKTTIADKELVISTGKLAQLASGSVTVRYGDTVVLATAVVAAEARDDIDYFPLLVD
YEERLYAAGKISGSRFIKREGRPSEQAILTCRLIDRPIRPLFPKAFKNDVQVVITVLSFD
LENDPGIISIIAASAALCQSNAPFEGPVAASRVGLIDGEFVLNPTVKQLENSKLDLVVAG
NKEKVLMLEAGSNEVDEKTMIEAIKFGHKGLQPALEIQKELISETKHTVEEAEEPAIIKE
IKSYLGKKLAEIVYVTDKAKRQEQISAFEKEVLENFEGNYKQIELKSAFGQVLEKEVRQA
VIDKEIRPDGRKIDEIRPISVEVDLLPRTHGSGLFTRGQTQVMSIITLGPPSEEQIIETM
EEEGTKRYMHHYNFPPFSTGEVKPMRSTSRREIGHGALAERALLPVIPSREEFPYTIRVV
SEVLASNGSSSMASTCGSTLALMDAGVPIKTPVAGIAMGLMTSEDGKKHKILTDIAGIED
FAGDMDFKITATKDGITAIQLDTKLKGLDFDVLQEALVAARKANDTILSKINAVISEPRK
ELSKYAPRIETVKIPIDKIGEIIGPGGKNIRKLIEDCGGKEVITIDIEDDGTVTVASIEP
EASKKALTYIEGVTKEVELGKIYEGPVTTIVKDRMSGKEIGAIVQVLPNQDGMVHISQIA
DERVEKIEDVLKIGQVVKVKVMEIDKERGRVSLSIKAAKE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagactttaaaacgaccattgcagataaggaattagttatctccactggtaaa
ttggcgcaacttgcgtctggttctgtaacggttcgctatggcgataccgttgttttggca
accgccgttgttgcggccgaagctcgcgacgacatcgattatttcccgttgttagtggat
tatgaggaaagattgtatgccgccggtaagatttctggttcacgatttattaaaagagaa
ggccgtccgtcagaacaggcaatacttacttgccgcttgattgaccgaccgattcgtcct
ttgtttccaaaagcgttcaagaatgatgtacaggttgttatcactgttttatctttcgat
ttagaaaacgacccaggtatcatttccatcatcgccgcttcagccgctctttgccagtca
aacgcacctttcgaaggtccagtggctgcttccagagttggtttaatcgacggtgaattt
gttttgaacccaaccgttaagcaattggaaaattccaaacttgacttggttgtcgccgga
aataaagaaaaagttttgatgcttgaggccggttccaacgaagttgacgaaaagactatg
attgaagccataaaattcggtcacaaaggtcttcaaccagcgcttgaaattcaaaaagag
cttatttctgaaaccaagcatacggttgaagaagctgaagaacctgcaattattaaagaa
attaaatcatatcttggcaagaaattggccgaaatcgtttatgtaacagataaagccaag
cgtcaagaacaaatttctgcctttgaaaaagaagttttggaaaattttgaaggtaactat
aagcaaattgaattaaaatcagcttttggccaagttttggaaaaagaagttcgtcaagct
gtcattgataaagaaattcgtccagacggccgtaaaatcgacgagattcgtccgatttcg
gttgaagtggacttattgcctcgcacccacggttcaggattatttactcgtggtcagacg
caggttatgtcgattatcacccttggaccaccttctgaagaacagatcattgaaacaatg
gaagaagaaggtaccaagagatatatgcatcattataacttcccaccattttcaacgggt
gaagttaaaccaatgcgttcaacatcacgccgagaaattggtcatggcgccttagctgaa
agagccttacttcctgtcattccttcacgtgaagaattcccttataccattcgtgttgtt
tctgaagttttggcttcaaatggttcgtcttcaatggcttctacctgcggttcaacctta
gccttgatggatgctggcgttccgattaaaactcctgttgccggtattgctatgggctta
atgacttctgaagatggcaaaaaacataagattttgactgatattgccggtattgaagac
tttgccggagatatggactttaagattaccgccactaaagatggtattactgctattcag
ttagataccaaattaaaaggtttggacttcgacgttttacaagaagccttggttgccgct
cgcaaagcaaatgacacaattttaagcaaaatcaacgctgttatatctgaacctcgcaaa
gaactttccaaatatgccccaagaattgaaaccgtgaaaatcccgattgataaaatcggt
gaaattatcggtcctggcggcaagaatattcgcaaattgattgaagattgcggtggcaaa
gaagtcattacgatcgatatcgaggatgatggtactgttacggttgcctcaattgaacca
gaagcttctaagaaagctttgacttatatcgaaggcgttaccaaagaagtcgaattaggt
aagatttatgaaggtccagtgaccactatcgtcaaagacagaatgtctggcaaagaaatc
ggcgccattgttcaagttttgccaaaccaagatggtatggttcatatttctcagattgcc
gacgaacgggtagaaaaaattgaagacgtcttgaaaatcggccaagtcgttaaagtgaaa
gtcatggaaattgataaggaacggggcagagtttcgctttcgatcaaagccgctaaagaa
taa
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