Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0604
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Entry
UT28_C0001G0604 CDS
T03992
Name
(GenBank) ATP-dependent DNA ligase, DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UT28_C0001G0604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbgw03400
]
UT28_C0001G0604
Enzymes [BR:
bbgw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UT28_C0001G0604
DNA repair and recombination proteins [BR:
bbgw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UT28_C0001G0604
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AKM82405
UniProt:
A0A0G4B481
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All DBs
Position
complement(554961..555887)
Genome browser
AA seq
308 aa
AA seq
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MPKLINQNSEMILTLENKKVKISNPSKIFWPEEKISKLDLINFYTEIAPFILPYLEGRPE
SLFRTPDGIKGLGFFQKDTSNLNLPDWIETKTVSKMENSLTKYLIINDLASLIYVVNLGC
IEINPWASKGPDFEKPDYLILDLDPVESSFDNVIKTALIIKEILDDLNIEGYPKTSGKRG
LHIYLPTGAKYDYAQIKTLAEIIANLAHRKAADFTSLERSPKKRKGKVYLDWLQNGLDKT
TVAPYSVRPAIKATVSVPLDWEEIRSGLNPEDFNLKTVTARLKKKGDLFSSILYSTGFDL
KKVLKKIS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaattaataaatcaaaattctgaaatgatattaacacttgaaaacaaaaaagtt
aaaatttcgaatccatcgaaaatattttggccagaagaaaaaatctctaaattagattta
ataaatttttatacagaaatcgcaccgtttattctaccgtatttagaaggaaggcctgaa
tcactttttcgaacaccagatggaattaaaggattaggtttttttcaaaaagacacttcc
aatttaaatctacccgattggattgaaactaaaacagtcagcaagatggaaaatagttta
actaagtatttaatcattaacgatcttgcctctttaatttatgtggtgaatctgggctgt
attgaaataaatccctgggcttcaaaaggcccagatttcgaaaaacctgactatttaata
cttgatcttgatcctgttgaaagctcttttgataacgtcataaagacggctttaataatt
aaagagattttagacgatcttaatattgagggttacccaaaaacttctggaaaaagaggc
ctacatatctatctgcctacaggcgctaaatacgattacgcacaaataaagacattggca
gagattattgcaaacttagcacatcgcaaggcagcagattttactagtctggaaagaagc
ccaaaaaaaagaaaaggtaaggtatatttagattggttacaaaacggattagacaaaaca
accgttgcaccttattcagttcgtccagccataaaagctactgtatcagtccctcttgat
tgggaggaaataagaagcggcttaaacccggaagattttaatttgaaaacagtaacggct
cgacttaaaaagaagggagatttattttcttcaattttatactcaacaggatttgatctt
aaaaaagttttgaagaaaatttcatga
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