Berkelbacteria bacterium GW2011_GWE1_39_12: UT28_C0001G0865
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Entry
UT28_C0001G0865 CDS
T03992
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bbgw
Berkelbacteria bacterium GW2011_GWE1_39_12
Pathway
bbgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UT28_C0001G0865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbgw03019
]
UT28_C0001G0865
03009 Ribosome biogenesis [BR:
bbgw03009
]
UT28_C0001G0865
Enzymes [BR:
bbgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UT28_C0001G0865
Messenger RNA biogenesis [BR:
bbgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UT28_C0001G0865
Ribosome biogenesis [BR:
bbgw03009
]
Prokaryotic type
rRNA helicases
UT28_C0001G0865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Flavi_DEAD
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AKM82642
UniProt:
A0A0G4B6K0
LinkDB
All DBs
Position
complement(761904..763133)
Genome browser
AA seq
409 aa
AA seq
DB search
MCLQKKDYYMYQAYRPKSKFGGNNSNYNRNRFQGRPKRSFGESIDPNRFVQKATNFNIEI
PTEIKNKFADFKFCQELNRNLQYKKYEIPTPIQDQSIEHIMNGRDIVGLANTGTGKTAAF
LLPLINRAFLNKNERVLIIAPTRELANQISNEMHEFSFSMKVFQATCVGGMPMGKQIQSL
RRNPNFVIGTPGRLKDLANKNFLKLETFHNIILDEVDRMLDMGFVDDISEILNLLPKDRQ
SLFFSATMPPKIRVLVDKFLVNPVTVQIKSRDTAENVDQDVVRCSKDQKLEKLHEILSKP
ETDKVLIFSETKRDVEKLTNDLIAKGFRADSIHGDKRQGQRQRSLNLFKTSQVKILVATD
VAARGIDIKDISHVINYTQPQTYTDYIHRIGRTGRCGKTGIALTFVESR
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
ttgtgtctacaaaagaaagattactacatgtatcaagcctacagaccgaaatctaagttt
ggcggaaacaattcaaactacaatcgtaaccgttttcagggaagaccaaaacgtagtttt
ggtgaatcaattgacccaaatcgcttcgttcaaaaagcgacgaattttaatattgagata
ccaactgaaattaaaaataagtttgccgattttaaattctgccaagaattaaatcgaaat
cttcaatataaaaaatatgagattccaactccgattcaggatcaatcaattgaacacatt
atgaacggccgcgatattgtaggacttgctaataccggtacaggcaaaactgccgccttt
ttactaccattaattaaccgcgcttttctaaataaaaacgaaagagttttgataattgct
ccaaccagagaacttgctaatcagatttctaacgaaatgcatgaattttcgttttcaatg
aaagtttttcaagccacctgcgttggcggtatgccaatgggcaaacaaattcaaagtctt
cgacgcaatccaaactttgtcattgggacacctggccgattaaaagatttggctaataaa
aatttcttgaaattagaaacttttcacaatattattctggacgaagttgatcgcatgcta
gacatgggatttgtagatgacatttcagaaatcttaaatctcttgcctaaggatcgccag
tctcttttcttttcggctactatgccaccaaaaatcagagtcttagttgataaattcttg
gtcaatccagtgactgttcaaattaagtcccgcgacacagcagaaaatgtcgatcaagat
gtggtgagatgcagtaaagatcaaaaacttgaaaaacttcatgaaattctttctaaacca
gaaacggacaaggttttaatcttttcagaaactaaacgagatgttgaaaaactgacaaac
gatttaattgcaaaaggttttagagccgattcaattcacggcgacaaacgccaaggccaa
cgccagagatcgttaaatttatttaaaactagtcaagttaaaatcttagttgctaccgac
gtagctgccagaggtattgatatcaaagatatttctcatgttatcaattacactcagcca
caaacctacaccgattatattcaccgcattggtcgaaccggccgctgcggtaaaaccggg
attgctctcacctttgtcgaaagccgataa
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